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Commits on Jan 24, 2025

• fix issue in tabix VEP PR (#7361)

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  nvnieuwk

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  ef36bae

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• tabix vep output (#7360)

  nvnieuwk

  authored
  5a7ae28

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Commits on Jan 23, 2025

• update vcfanno output (#7353)

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  nvnieuwk

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Commits on Jan 8, 2025

• fix star align language server errors (#7276)

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  nvnieuwk

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Commits on Dec 10, 2024

• bump ngsbits (#7193)

  nvnieuwk

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Commits on Nov 5, 2024

• nf-test rtgtools format (#6939)

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Commits on Oct 22, 2024

• update elprep/filter (#6806)

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  nvnieuwk

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  nf-core-bot

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  909c4dc

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Commits on Oct 21, 2024

• Add nf-test to vcf_annotation_ensemblvep_snpeff + some general fixes (#6779)

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  nvnieuwk

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  maxulysse

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  1b2fdf0

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Commits on Oct 18, 2024

• new module elprep/fastatoelfasta (#6804)

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  nvnieuwk

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• Some syntax updates (#6801)

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Commits on Oct 8, 2024

• add index to bcftools filter input to enable region filtering (#6751)

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  nvnieuwk

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Commits on Oct 7, 2024

• Don't use test scripts when the -fisher option has been given in vardictjava (#6747)

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  nvnieuwk

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Commits on Sep 30, 2024

• update vcfeval inputs + nf-test conversion (#6714)

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Commits on Sep 26, 2024

• create indices when missing (#6697)

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Commits on Sep 24, 2024

• update wisecondorx predict output (#6687)

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Commits on Sep 9, 2024

• Add support for pip dependencies and force version pinning in conda (#6588)

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  nf-core-bot

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  c3c0c5f

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Commits on Sep 5, 2024

• Fix wrong array definition in env schema (#6585)

  nvnieuwk

  authored
  db53f41

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• nf-test + update to genotypegvcfs (#6553)

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  and

  fellen31

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  8b74c80

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Commits on Aug 28, 2024

• remove slashy strings from multiqc (#6431)

  nvnieuwk

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  19ca321

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Commits on Aug 27, 2024

• remove defaults from utils_nextflow_pipeline (again) (#6382)

  nvnieuwk

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Commits on Aug 26, 2024

• Add nfschema plugin subwf (#6217)

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  nvnieuwk

  and

  maxulysse

  authored
  bbd5a41

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Commits on Jul 3, 2024

• Update nft-bam to v0.3.0 (#5912)

  nvnieuwk

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Commits on Jun 6, 2024

• Bump nft-bam to v0.2.0 (#5766)

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Commits on Jun 5, 2024

• nf-test bamaligncleaner + test out nft-bam (#5755)

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Commits on May 29, 2024

• Move annotsv containers to seqera containers (#5716)

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Commits on May 17, 2024

• use conda-forge instead of anaconda (#5626)

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  and

  ewels

  authored
  cf3ed07

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Commits on May 8, 2024

• Bump annotsv/installannotations (#5571)

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  nvnieuwk

  authored
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Commits on May 7, 2024

• bump annotsv/annotsv to v3.4.1 (#5570)

  nvnieuwk

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Commits on May 6, 2024

• nf-test + fix 3 modules (#5569)

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  92bf2a8

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Commits on May 3, 2024

• Add/fix more stubs (#5563)

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  nvnieuwk

  and

  SPPearce

  authored
  b42fec6

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• nf-test + fix stub in bcftools/annotate (#5559)

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  nvnieuwk

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  2ad29c2

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Commits on May 2, 2024

• update bedgovcf to v0.1.1 (#5553)

  nvnieuwk

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Commits on Apr 25, 2024

• bump wisecondorx to v1.2.7 (#5523)

  nvnieuwk

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Commits on Apr 19, 2024

• bump wisecondorx modules (#5506)

  nvnieuwk

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Commits on Apr 11, 2024

• new module htsnimtools/vcfcheck (#5471)

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