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Split deepvariant pipeline #614

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fa2k opened this issue Sep 20, 2024 · 1 comment
Open

Split deepvariant pipeline #614

fa2k opened this issue Sep 20, 2024 · 1 comment
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enhancement Improvement for existing functionality

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@fa2k
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fa2k commented Sep 20, 2024

Description of feature

I've been involved in splitting the DeepVariant process, to make it possible to run the variant calling on GPU nodes, but make examples on normal CPU nodes. Can we use the new DEEPVARIANT subworkflow in raredisease? Here is the PR nf-core/modules#6172
I could help with adding this to raredisease, if this is okay.
@fa2k fa2k added the enhancement Improvement for existing functionality label Sep 20, 2024
@jemten
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jemten commented Sep 23, 2024

That sounds like a good plan to me. What do you think @ramprasadn?

@fa2k fa2k mentioned this issue Dec 6, 2024
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enhancement Improvement for existing functionality
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Hackathon October 2024
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