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33 Open 184 Closed
33 Open 184 Closed
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Issues list

Order of samples in family SNV and SV VCFs is different Effort low
#650 opened Nov 30, 2024 by sitems
1
Mosdepth coverage report of WES regions
#645 opened Nov 10, 2024 by sitems
mosdepth error on dev branch bug Something isn't working
#626 opened Oct 7, 2024 by fa2k
3
gnomAD v4.1 SV database contains mix of SV and CNV - svdb problem bug Something isn't working
#615 opened Sep 20, 2024 by fa2k
1
Split deepvariant pipeline enhancement Improvement for existing functionality
#614 opened Sep 20, 2024 by fa2k
1
Help with figuring out if error is pipeline or HPC related bug Something isn't working
#612 opened Sep 18, 2024 by hrydbeck
1
Allow multiple unrelated cases/families in samplesheet.csv enhancement Improvement for existing functionality
#604 opened Aug 22, 2024 by sitems
1
Option to publish GVCFs enhancement Improvement for existing functionality
#602 opened Aug 20, 2024 by sitems
2
filter_vep broken with hg38 bug Something isn't working
#599 opened Aug 15, 2024 by fellen31
1
Test+Docker profile fails: "ValueError: call_variants_outputs did not pass sanity check." bug Something isn't working
#592 opened Aug 12, 2024 by sitems
1
Test+Docker profile fails: "The TensorFlow library was compiled to use AVX instructions, but these aren't available on your machine." bug Something isn't working
#590 opened Aug 12, 2024 by sitems
5
Mismatch with new DNAScope ML model format bug Something isn't working
#568 opened Jun 13, 2024 by Jakob37
3
Bigtools enhancement Improvement for existing functionality
#564 opened Jun 8, 2024 by ramprasadn
https://ai.marrvel.org / how to integrate to Scout and our analysis?
#560 opened May 27, 2024 by fulyataylan
5
Error_during_installation bug Something isn't working
#537 opened Apr 1, 2024 by vishramt7
10
rtgtools: Add truth set filtered by bait set for WES samples bug Something isn't working enhancement Improvement for existing functionality
#514 opened Feb 8, 2024 by peterpru
Update CADD to version 1.7
#513 opened Feb 6, 2024 by jemten Release 1.3.0
2
manta path error bug Something isn't working
#480 opened Jan 16, 2024 by egenomics
14
use estimated sex in analysis enhancement Improvement for existing functionality
#465 opened Jan 8, 2024 by jemten
SMNCOPYNUMBERCALLER ZeroDivisionError: float division by zero bug Something isn't working
#447 opened Nov 21, 2023 by yunhua1031
4
somalier (sample control + ancestry) enhancement Improvement for existing functionality
#446 opened Nov 15, 2023 by egenomics
@Lucpen
1
Wrong memory qualifier in postprocessgermlinecnvcalls bug Something isn't working
#441 opened Nov 8, 2023 by Jakob37
@ramprasadn
1
DeepMind AlphaMissense Effort low enhancement Improvement for existing functionality on hold Not planned yet or needs refinement
#427 opened Sep 20, 2023 by dnil
1
GENMOD and missing values on master bug Something isn't working
#426 opened Sep 17, 2023 by lfearnley
Add BPHunter feature-request Request for a new pipeline feature on hold Not planned yet or needs refinement
#424 opened Sep 11, 2023 by ramprasadn
ProTip! Find all open issues with in progress development work with linked:pr.