BS4020 Final Year Project

Project title: Characterising the diversity and functional profiles of the rhizobiome in mixed dipterocarp forest

By: Ng Yong Zhi

Obtained A grade for the module.

Disclaimer

This repository contains all the scripts used in fulfilment of the requirements for BS4020 Final Year Project at School of Biological Sciences, Nanyang Technological University. I do not claim ownership of any of the softwares used in the process.

Structure

The folders for the different steps of analysis are in their respective folders.

• shell_scripts folder contains batch scripts for running softwares on the compute cluster.

• R_scripts folder contains scripts for statistical analysis in R.

• py_helper_functions.py contains functions for reformatting data into tsv files for easy import into R for analysis.

Overview of pipeline