Course material for the 2025 edition of the Statistical Neuroscience course

Variational Animal Motion Embedding - A tool for time series embedding and clustering

Free Motion Capture for Everyone 💀✨

LISBET Is a Social BEhavior Transformer (LISBET)

Python particle tracking toolkit

Very fast greedy diffeomorphic registration code

PyAV-based video reader plugin for Napari

Overview of all NIU repos

Overview of all Neuroinformatics Unit repos

Slides introducing the software skills courses on the SWC/GCNU PhD course

A series of python exercises to make the students practice before starting the main project

Slides for talk at the INCF/OCNS Software working group on 2024-07-09

Repository used as a playground for the In2Research placement we hosted in summer 2024.

Evaluate the model for the translocator project

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Slides for the UCL Neuropixels course - "Aligning spikes to histology with BrainGlobe"

Materials for the Whole brain microscopy analysis with BrainGlobe and napari course

Convert stacks of images to chunked datasets

Parsing of whole-brain microscopy metadata

Base16 for Shells

Create a knowledge graph connecting papers having shared methodologies

An R toolbox for analysing animal movement across space and time

Multicamera Calibration + Pose Estimation --> Open Source Motion Capture

Scientific Inkscape: Inkscape extensions for figure resizing and editing