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Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Quilt is a data mesh for connecting people with actionable data
OOP components for plotly dash that make dashboard components composable, reusable and configurable
Marjorie is a web-based approach to visualize and explore patterns in type 1 diabetes data.
Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
Database diagrams editor that allows you to visualize and design your DB with a single query.
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn
A web-based visual analysis tool for creating and characterizing cohorts.
Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
Nextflow pipeline for IMC segmentation tasks.
Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.
Scalable gVCF merging and joint variant calling for population sequencing projects
Linter rules for Nextflow DSL scripts
Multiple trajectory alignment of time-series data
A centralized location for storing curated data from cBioPortal