scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

A fast, microcontroller-based dynamic clamp system

Multi-animal pose estimation using SLEAP in MATLAB

General purpose Matlab toolbox for neuroscience research created by Van Hooser lab and collaborators

SanPy is software for whole-cell current clamp analysis.

A Matlab utility for plotting correlation matrices, with similar appearance to Seaborn in Python.

XTensions built using Python 3.7 for Imaris software

Imaris XTensions written in Matlab for image analysis

TREES toolbox

Best practices for creating high-quality and user-friendly MATLAB toolboxes, including recommendations for file organization, testing, and releasing the toolbox.

spike extraction from calcium signals (Deneux et al., 2016)

a general-purpose Matlab toolbox

Matlab implementation for k-Shape

Accurate, efficient Earth Mover's Distance for Python (and MATLAB).

Multi-animal Pose Tracking using SLEAP in MATLAB

matlab fuction for reading abf files including v2.0 files

MATLAB Code for Interactive Magnification of Customized Regions.

A Matlab interface for reading and writing NWB files

SimpylCellCounter - An Automated Solution for Quantifying Cells in Brain Tissue

Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biology 16:143 (2018) doi: 10.1186/s12915-018-0606-4.

GUI in MATLAB for calcium transients extraction from imaging experiments

EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.

Functional image analysis

Tools for processing 2P recordings

Platform for Calcium Imaging analysis. DEPRECATED.

MATLAB package to generate contrast plots

jsystem: Fast drop-in replacement for matlab's slow 'system' command

A Matlab application for electrophysiology data analysis

A real-time dynamic clamp sketch for the pyClamp interface