SemiBin: metagenomics binning with self-supervised deep learning

Assessing the quality of metagenome-derived genome bins using machine learning

read cloud assembler

Single-cell genomic sequencing of the human gut microbiome

🍒 Cherry Studio is a desktop client that supports for multiple LLM providers. Support deepseek-r1

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 2, and other large language models.

Zero-cost asynchronous programming in Rust

A command-line benchmarking tool

R client for the OmniPath web service

Ultra-fast and memory-efficient (meta-)genome assembler

hybrid assembly pipeline for bacterial genomes

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

Command-line sampling profiler for macOS, Linux, and Windows

A collection of loading indicators animated with CSS

Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics

Official repository of "SAMURAI: Adapting Segment Anything Model for Zero-Shot Visual Tracking with Motion-Aware Memory"

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Open Source Data Management Software

Nextflow pipeline to analyze ONT UMI Sequencing data

Basic workflow for ATAC-seq analysis

The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.

Quick serialization of R objects