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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 4

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 235 repositories
  • vardict Public
    oicr-gsi/vardict’s past year of commit activity
    0 0 0 0 Updated Dec 24, 2024
  • Gaea Public

    Register genomics data in EGA

    oicr-gsi/Gaea’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Dec 24, 2024
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 1 Updated Dec 23, 2024
  • cerberus Public

    File provenance library

    oicr-gsi/cerberus’s past year of commit activity
    Java 0 MIT 0 0 0 Updated Dec 23, 2024
  • smmipQC Public

    Set up manual smMip QC analyses

    oicr-gsi/smmipQC’s past year of commit activity
    Python 0 0 0 0 Updated Dec 23, 2024
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 4 5 6 Updated Dec 20, 2024
  • arriba Public

    Fusion caller which runs off of STAR bam

    oicr-gsi/arriba’s past year of commit activity
    WDL 2 0 0 0 Updated Dec 20, 2024
  • mrdetect Public

    workflow to detect Minimal Residual disease with MRDetect

    oicr-gsi/mrdetect’s past year of commit activity
    WDL 0 0 1 1 Updated Dec 19, 2024
  • vidarrTracker Public

    A simple logger of workflow deployment to vidarr instances

    oicr-gsi/vidarrTracker’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 19, 2024
  • jira-rest-java-client Public

    Fork of Atlassian's JIRA REST Java Client (https://bitbucket.org/atlassian/jira-rest-java-client/)

    oicr-gsi/jira-rest-java-client’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Dec 19, 2024
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