feat: add zstd support (#86) #84
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: version info | |
| run: rustc --version; cargo --version; | |
| - name: Run all tests | |
| run: cargo test | |
| - name: Run all tests (no default features) | |
| run: cargo test --no-default-features | |
| wasm: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: Build on wasm32-unknown-unknown | |
| run: | | |
| rustup target add wasm32-unknown-unknown | |
| cargo build --all --no-default-features --target wasm32-unknown-unknown | |
| fmt: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - uses: actions-rs/cargo@v1 | |
| with: | |
| command: fmt | |
| args: --all -- --check | |
| clippy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - uses: actions-rs/cargo@v1 | |
| with: | |
| command: clippy | |
| args: -- -D warnings | |
| bench: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: run benches | |
| run: cargo bench | |
| fuzz: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: nightly | |
| override: true | |
| - name: run fuzz for 3 minutes each | |
| run: | | |
| cargo +nightly install cargo-fuzz | |
| cargo +nightly fuzz run parse_fasta -- -max_total_time=180 | |
| cargo +nightly fuzz run parse_fastq -- -max_total_time=180 | |
| python-bindings: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: version info | |
| run: rustc --version; cargo --version; | |
| - name: Run all tests | |
| run: cargo test --features=python_test | |
| - name: Install python headers | |
| run: sudo apt-get update && sudo apt-get install python3-dev python3-pip python3-venv | |
| - name: Install maturin | |
| run: | | |
| python3 -m venv venv | |
| . venv/bin/activate | |
| pip3 install maturin | |
| pip3 show maturin | |
| - name: add library to venv | |
| run: | | |
| . venv/bin/activate | |
| maturin develop --features=python | |
| - name: Run the python tests | |
| run: | | |
| . venv/bin/activate | |
| python test_python.py | |
| - name: compile taxonomy with python bindings | |
| run: | | |
| . venv/bin/activate | |
| maturin build --features=python --release --strip --manylinux=off |