Docker image preparation for final point release (#209)

* install s1-reader from source code

* update environment.yaml and specfile

* install s1-reaeder 0.2.2 from conda forge

* function name update in unit test code

* function name update

* bump the version

---------

Co-authored-by: Seongsu Jeong <[email protected]>

docker/specfile.txt

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-https://conda.anaconda.org/conda-forge/linux-64/fiona-1.9.4-py311hbac4ec9_0.conda
-https://conda.anaconda.org/conda-forge/linux-64/isce3-0.14.0-py311h360d1b0_1.conda
+https://conda.anaconda.org/conda-forge/linux-64/isce3-0.15.0-py311h360d1b0_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/pysolid-0.3.1-py311hca9a023_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/scikit-image-0.21.0-py311hb755f60_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/scikit-learn-1.3.0-py311hc009520_0.conda
 https://conda.anaconda.org/conda-forge/noarch/mapclassify-2.5.0-pyhd8ed1ab_1.conda
-https://conda.anaconda.org/conda-forge/noarch/s1reader-0.2.1-pyhd8ed1ab_0.conda
+https://conda.anaconda.org/conda-forge/noarch/s1reader-0.2.2-pyhd8ed1ab_0.conda
 https://conda.anaconda.org/conda-forge/noarch/geopandas-0.13.2-pyhd8ed1ab_1.conda
 https://conda.anaconda.org/conda-forge/noarch/dem_stitcher-2.5.0-pyhd8ed1ab_0.conda
+

environment.yml

@@ -14,10 +14,10 @@ dependencies:
   - scipy>=1.0,<1.13
   - yamale>=4.0
   - h5py>=3.5
-  - s1reader>=0.2.1
   - shapely>=1.8
   - requests>=2.0
   - scikit-image
+  - s1reader=0.2.2
 # CI unit test
   - pytest
   - pluggy
@@ -27,4 +27,4 @@ dependencies:
   - rasterio
   - dem_stitcher
   - gxx_linux-64>=9,<10
-
+

src/compass/s1_geocode_stack.py

@@ -9,7 +9,7 @@
 import journal
 import pandas as pd
 import yaml
-from s1reader.s1_orbit import get_orbit_file_from_dir, parse_safe_filename
+from s1reader.s1_orbit import get_orbit_file_from_dir, _parse_safe_filename
 from s1reader.s1_reader import load_bursts
 from shapely import geometry
 
@@ -312,7 +312,7 @@ def _filter_by_date(zip_file_list, start_date, end_date, exclude_dates):
     zip_file_list: list
         Filtered list of zip files
     """
-    safe_datetimes = [parse_safe_filename(zip_file)[2] for zip_file in zip_file_list]
+    safe_datetimes = [_parse_safe_filename(zip_file)[2] for zip_file in zip_file_list]
     if start_date:
         start_datetime = datetime.datetime.strptime(start_date, '%Y%m%d')
     else:

src/compass/version.py

@@ -8,6 +8,7 @@
 # release history
 Tag = collections.namedtuple('Tag', 'version date')
 release_history = (
+    Tag('0.5.1', '2023-09-09'),
     Tag('0.5.0', '2023-08-25'),
     Tag('0.4.1', '2023-08-14'),
     Tag('0.4.0', '2023-07-26'),

tests/conftest.py

@@ -5,7 +5,7 @@
 
 import pytest
 import requests
-from s1reader.s1_orbit import check_internet_connection
+from s1reader.s1_orbit import _check_internet_connection
 
 from compass.utils import iono
 from compass.utils.h5_helpers import DATA_PATH
@@ -24,7 +24,7 @@ def download_if_needed(local_path):
     if os.path.isfile(local_path):
         return
 
-    check_internet_connection()
+    _check_internet_connection()
 
     dst_dir, file_name = os.path.split(local_path)