Repositories list

• brainrender-docs

  Public archive
  docsneuroscienceanatomy+ 1brainrender

  CSS

  •4•9•0•0•Updated Sep 16, 2024Sep 16, 2024

• micrometa

  Public archive
  Parsing of whole-brain microscopy metadata

  Python

  •

  MIT License

  •0•2•0•0•Updated Jul 4, 2024Jul 4, 2024

• bg-atlasgen

  Public archive
  Tools for packaging atlases for use with BrainGlobe

  pythonneuroscienceregistration+ 2brainatlas

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •24•12•0•0•Updated Feb 21, 2024Feb 21, 2024

• imio

  Public archive
  Loading and saving of image data.

  tiffimage-processingloading+ 3savingniftitiff-series

  Python

  •

  MIT License

  •3•10•0•0•Updated Feb 9, 2024Feb 9, 2024

• brainreg-napari

  Public archive
  Automated 3D brain registration in napari with support for multiple species and atlases.

  neuroscienceregistrationmicroscopy+ 4brainanatomyatlasesnapari

  Python

  •

  MIT License

  •6•15•0•0•Updated Jan 5, 2024Jan 5, 2024

• cellfinder-napari

  Public archive
  Efficient cell detection in large images using cellfinder in napari

  tensorflowkerasresnet+ 5object-detectioncell-detectionnapari-pluginnaparicellfinder

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6•23•0•0•Updated Jan 5, 2024Jan 5, 2024

• cellfinder-core

  Public archive
  Standalone cellfinder cell detection algorithm

  tensorflowkerasresnet+ 5object-detectionimage-analysismicroscopycell-detectioncellfinder

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •16•19•0•0•Updated Jan 3, 2024Jan 3, 2024

• course-dec-2023

  Public archive
  Materials for the BrainGlobe & napari course at the Sainsbury Wellcome Centre

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •2•6•1•0•Updated Dec 7, 2023Dec 7, 2023

• cellfinder-visualize

  Public archive
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•9•0•0•Updated Dec 7, 2023Dec 7, 2023

• slicereg

  Public archive
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

  3d-modelszebrafishrat-brains+ 3pythonmouse-brains2d-slices

  Python

  •

  GNU General Public License v3.0

  •13•36•0•0•Updated Nov 24, 2023Nov 24, 2023

• probeplanner

  Public archive
  Helps plan where to put things in brains

  visualizationneuroscience

  Python

  •

  MIT License

  •1•10•0•0•Updated Nov 1, 2023Nov 1, 2023

• slides-roadmap-oct-2023

  Public archive
  SCSS

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Oct 30, 2023Oct 30, 2023

• bg-gitbook

  Public archive
  Mirror of the brainglobe GitBook page

  4•7•0•0•Updated Jun 19, 2023Jun 19, 2023

• brainglobe-web

  Public archive
  brainglobe.info website

  HTML

  •

  MIT License

  •0•6•0•0•Updated Jun 19, 2023Jun 19, 2023

• actions

  Public archive
  Re-usable GitHub Action scripts

  MIT License

  •0•6•0•0•Updated Jan 31, 2023Jan 31, 2023

• napari-brainreg

  Public archive
  Visualise brainreg registration output

  napari-plugin

  Python

  •

  MIT License

  •0•10•0•0•Updated Nov 20, 2021Nov 20, 2021

• napari-cellfinder

  Public archive
  napari-plugin

  Python

  •

  MIT License

  •1•8•0•0•Updated Nov 20, 2021Nov 20, 2021

• brainrender_paper

  Public archive
  Code for recreating the figures in the brainrender paper (Claudi et al. 2020)

  Python

  •

  MIT License

  •0•12•0•0•Updated Dec 11, 2020Dec 11, 2020

• bg-brainrender-gui

  Public archive
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•12•0•0•Updated Nov 26, 2020Nov 26, 2020

• napari-brainreg-standard

  Public archive
  Visualise brainreg registration output in standard space

  napari-plugin

  Python

  •

  MIT License

  •0•7•0•0•Updated Aug 24, 2020Aug 24, 2020

• bgviewer

  Public archive
  Visualisation and exploration of brain atlases

  Python

  •

  GNU General Public License v3.0

  •0•9•0•0•Updated Aug 21, 2020Aug 21, 2020