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130 repositories
setup-nextflow
Public- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
- Parallelised and automated construction of metagenomic classifier databases of different tools
drugresponseeval
PublicPipeline for testing drug response prediction models in a statistically and biologically sound way.actions-runners
Publictest-datasets
Publickmermaid
Publicproteomicslfq
Publicproteinfold
PublicProtein 3D structure prediction pipelinemetatdenovo
PublicAssembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.callingcards
Publicbamtofastq
PublicConverts bam or cram files to fastq format and does quality control.fastqrepair
PublicA pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disorderedspatialvi
PublicPipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.raredisease
PublicCall and score variants from WGS/WES of rare disease patients.proteinfamilies
PublicGeneration and update of protein familiestaxprofiler
PublicHighly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic datareferences-assets
Publicsammyseq
PublicPipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.configs
PublicConfig files used to define parameters specific to compute environments at different Institutionsscdownstream
PublicA single cell transcriptomics pipeline for QC, integration and making the data presentablestats
Publicreferences
Publicmag
PublicAssembly and binning of metagenomeslogos
Publiconcoanalyser
Publicchipseq
Public