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@wtsi-hgi Wellcome Trust Sanger Institute - Human Genetics Informatics

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    410 repositories

    • wes-qc

      Public
      Sample and variant QC for exome cohort studies
      Python
      •0•2•0•2•Updated Feb 21, 2025Feb 21, 2025

    • ibackup

      Public
      Performant backups of many files to iRODS
      Go
      •
      MIT License
      •0•0•0•2•Updated Feb 21, 2025Feb 21, 2025

    • wrstat-ui

      Public
      Go
      •
      MIT License
      •0•0•0•3•Updated Feb 21, 2025Feb 21, 2025

    • admixture-from-glimpse

      Public
      Run admixture on GLIMPSE imputed genotypes to predict sample populations
      Nextflow
      •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • nf_irods_to_lustre

      Public
      Fetch Cram files and/or Cellranger data from Sanger Irods to /lustre
      Python
      •
      GNU General Public License v3.0
      •3•0•0•1•Updated Feb 21, 2025Feb 21, 2025

    • spack-repo

      Public
      Spack Package Repository
      Python
      •
      MIT License
      •3•3•0•0•Updated Feb 20, 2025Feb 20, 2025

    • QTLight

      Public
      eqtl analysis pipeline using tensorqtl, saige-qtl and LIMIX
      Python
      •
      GNU General Public License v3.0
      •5•7•0•0•Updated Feb 18, 2025Feb 18, 2025

    • farmers-report

      Public
      Weekly report for farm usage
      R
      •0•0•0•1•Updated Feb 11, 2025Feb 11, 2025

    • nf_splicing

      Public
      a pipeline for splicing analysis using short reads
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • tt

      Public
      Manage temporary things
      Go
      •
      MIT License
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • go-farmer

      Public
      Go
      •
      MIT License
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • yascp

      Public
      scRNA multimodal analysis pipeline utilised for large dataset processing
      scrna-seq-analysis
      Python
      •
      GNU General Public License v3.0
      •7•14•0•0•Updated Jan 23, 2025Jan 23, 2025

    • nf_longread

      Public
      nextflow pipeline for long read processing
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • mercuryrc

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 20, 2025Jan 20, 2025

    • nf_tower_irods_to_lustre

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Jan 10, 2025Jan 10, 2025

    • softpack-web

      Public
      Softpack Web provides a graphical user interface for Softpack services.
      reactgraphql
      TypeScript
      •
      MIT License
      •0•0•5•0•Updated Jan 10, 2025Jan 10, 2025

    • gst

      Public
      GenGen Sample Tracker
      MIT License
      •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

    • condapaths

      Public
      Extract conda-related paths from wrstat stats.gz files
      Go
      •
      MIT License
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • conda-audited

      Public
      Wrapper script to and audit and configure miniconda and micromamba
      MIT License
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • go-softpack-builder

      Public
      Go implementation of a softpack builder service
      Go
      •
      MIT License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • softpack-core

      Public
      SoftPack Core
      Python
      •
      MIT License
      •0•0•1•0•Updated Nov 18, 2024Nov 18, 2024

    • MAVEQC

      Public
      R
      •
      MIT License
      •4•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • softpack-docs

      Public
      SoftPack Documentation
      JavaScript
      •0•0•5•12•Updated Nov 5, 2024Nov 5, 2024

    • osdataproc

      Public
      osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.
      Jinja
      •
      Other
      •3•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • go-softpack-analytics

      Public
      Go
      •
      MIT License
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • coloc-flow

      Public
      Nextflow
      •1•3•0•0•Updated Oct 20, 2024Oct 20, 2024

    • sarek

      Public
      Nextflow
      •
      MIT License
      •3•0•0•1•Updated Oct 18, 2024Oct 18, 2024

    • softpackdef

      Public
      Go
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • glimpse-nextflow

      Public
      Nextflow
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • softpack-builder

      Public
      SoftPack Builder provides services for building SoftPack environments
      Python
      •
      MIT License
      •0•0•1•12•Updated Sep 16, 2024Sep 16, 2024