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Removing examples too long on win-builder.r-project.org
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patzaw committed Oct 21, 2022
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8 changes: 4 additions & 4 deletions docs/TKCat-User-guide.html
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Expand Up @@ -8897,7 +8897,7 @@ <h2><span class="header-section-number">2.4</span> Adding information
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
</div>
<div id="min-coll-memb" class="section level2" number="2.5">
Expand Down Expand Up @@ -8935,7 +8935,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>However, as just discussed, the <em>HPO_hp</em> table refers to human
phenotypes and the <em>HPO_diseases</em> table to human diseases. These
Expand Down Expand Up @@ -9028,7 +9028,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>And the documented collection members of an MDB can be displayed as
following:</p>
Expand Down Expand Up @@ -9087,7 +9087,7 @@ <h2><span class="header-section-number">2.6</span> Writing an MDB in
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>Also writing these data and related information in text files make
them convenient to share with people using them in other analytical
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8 changes: 4 additions & 4 deletions docs/articles/TKCat-User-guide.html
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2 changes: 1 addition & 1 deletion docs/pkgdown.yml
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Expand Up @@ -3,7 +3,7 @@ pkgdown: 2.0.6
pkgdown_sha: ~
articles:
TKCat-User-guide: TKCat-User-guide.html
last_built: 2022-10-21T07:14Z
last_built: 2022-10-21T08:49Z
urls:
reference: https://patzaw.github.io/TKCat/reference
article: https://patzaw.github.io/TKCat/articles
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13 changes: 5 additions & 8 deletions docs/reference/memoMDB.html
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2 changes: 1 addition & 1 deletion docs/search.json
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8 changes: 4 additions & 4 deletions inst/doc/TKCat-User-guide.html
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Original file line number Diff line number Diff line change
Expand Up @@ -8897,7 +8897,7 @@ <h2><span class="header-section-number">2.4</span> Adding information
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
</div>
<div id="min-coll-memb" class="section level2" number="2.5">
Expand Down Expand Up @@ -8935,7 +8935,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>However, as just discussed, the <em>HPO_hp</em> table refers to human
phenotypes and the <em>HPO_diseases</em> table to human diseases. These
Expand Down Expand Up @@ -9028,7 +9028,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>And the documented collection members of an MDB can be displayed as
following:</p>
Expand Down Expand Up @@ -9087,7 +9087,7 @@ <h2><span class="header-section-number">2.6</span> Writing an MDB in
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>Also writing these data and related information in text files make
them convenient to share with people using them in other analytical
Expand Down
5 changes: 5 additions & 0 deletions inst/examples/memoMDB-examples.R
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Expand Up @@ -14,6 +14,9 @@ hpo <- read_fileMDB(
as_memoMDB()
count_records(hpo)

## Too long on win-builder.r-project.org
\dontrun{

hpoSlice <- slice(hpo, HPO_diseases=1:10)
count_records(hpoSlice)

Expand All @@ -26,3 +29,5 @@ if("stringr" %in% installed.packages()[,"Package"]){
)
count_records(epilHP)
}

}
2 changes: 1 addition & 1 deletion inst/pkgdown.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ pkgdown: 2.0.6
pkgdown_sha: ~
articles:
TKCat-User-guide: TKCat-User-guide.html
last_built: 2022-10-21T07:14Z
last_built: 2022-10-21T08:49Z
urls:
reference: https://patzaw.github.io/TKCat/reference
article: https://patzaw.github.io/TKCat/articles
Expand Down
5 changes: 5 additions & 0 deletions man/memoMDB.Rd
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8 changes: 4 additions & 4 deletions pkgdown/assets/TKCat-User-guide.html
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Original file line number Diff line number Diff line change
Expand Up @@ -8897,7 +8897,7 @@ <h2><span class="header-section-number">2.4</span> Adding information
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
</div>
<div id="min-coll-memb" class="section level2" number="2.5">
Expand Down Expand Up @@ -8935,7 +8935,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>However, as just discussed, the <em>HPO_hp</em> table refers to human
phenotypes and the <em>HPO_diseases</em> table to human diseases. These
Expand Down Expand Up @@ -9028,7 +9028,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>And the documented collection members of an MDB can be displayed as
following:</p>
Expand Down Expand Up @@ -9087,7 +9087,7 @@ <h2><span class="header-section-number">2.6</span> Writing an MDB in
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>Also writing these data and related information in text files make
them convenient to share with people using them in other analytical
Expand Down
8 changes: 4 additions & 4 deletions vignettes/TKCat-User-guide.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -8897,7 +8897,7 @@ <h2><span class="header-section-number">2.4</span> Adding information
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
</div>
<div id="min-coll-memb" class="section level2" number="2.5">
Expand Down Expand Up @@ -8935,7 +8935,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>However, as just discussed, the <em>HPO_hp</em> table refers to human
phenotypes and the <em>HPO_diseases</em> table to human diseases. These
Expand Down Expand Up @@ -9028,7 +9028,7 @@ <h2><span class="header-section-number">2.5</span> Documenting
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>And the documented collection members of an MDB can be displayed as
following:</p>
Expand Down Expand Up @@ -9087,7 +9087,7 @@ <h2><span class="header-section-number">2.6</span> Writing an MDB in
## For demonstrating ReDaMoR and TKCat capabilities, a very few information from the HPO (human phenotype ontology) has been extracted
## (https://hpo.jax.org/app/)
##
## Timesamp: 2022-10-21 09:12:51
## Timesamp: 2022-10-21 10:47:57
## </code></pre>
<p>Also writing these data and related information in text files make
them convenient to share with people using them in other analytical
Expand Down

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