Add rmdir function

paulranum11 · Jan 8, 2021 · 6683465 · 6683465
1 parent 60982c4
commit 6683465
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/python_only_tool/Splitseq_fun_lib.py b/python_only_tool/Splitseq_fun_lib.py
@@ -114,6 +114,10 @@ def remove_file_fun (filename):
     import os
     os.remove(filename)
 
+def remove_dir_fun (filename):
+    import shutil
+    shutil.rmtree(filename)
+
 def run_star_alignment_fun (numCores, starGenome, resultsDir):
     import os
     os.system(str("pushd " + resultsDir))
@@ -158,3 +162,8 @@ def run_umi_tools_fun (resultsDir):
     split_fastqF_fun()
     split_fastqR_fun()
     remove_file_fun()
+    remove_dir_fun()
+    run_star_alignment_fun()
+    run_featureCounts_SAF_fun()
+    run_samtools_fun()
+    run_umi_tools_fun()