IPython magic for SLURM.

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

Scripts and notes on how to analyse ancient DNA genotype data to understand population structure

This is the development home of the workflow management system Snakemake. For general information, see

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets

A robust model for quantitative comparison of ChIP-Seq data sets.

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

Assign gene names to regions in a BED file

Define regions in the genome

Web-extension for bypassing censorship in Russia

Jupyter Notebook Extension for monitoring your own Resource Usage

Single-Cell Clustering Assessment Framework

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

machine learning and deep learning tutorials, articles and other resources

Allele-specific analysis of RNA-seq and DNA-seq data

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq

Brief notes on how to run and access a jupyter notebook on a login node and a compute node using the SLURM cluster scheduler

ChIP-seq analysis notes from Ming Tang

Tutorial for generating and evaluating latent-space representations of vocalizations using UMAP

Julia module to perform haplotype allele-specific DNA methylation analysis.