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nextflowspawner Public
Spawn Nextflow pipelines from Jupyterhub and configure them interactively
Python GNU General Public License v3.0 UpdatedOct 3, 2024 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedJul 17, 2024 -
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slurmformspawner Public
Forked from cmd-ntrf/slurmformspawnerJupyterHub SlurmSpawner with a dynamic spawn form
Python MIT License UpdatedApr 15, 2024 -
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions.
Nextflow MIT License UpdatedNov 6, 2023 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedOct 18, 2023 -
Bismark Public
Forked from FelixKrueger/BismarkA tool to map bisulfite converted sequence reads and determine cytosine methylation states
HTML GNU General Public License v3.0 UpdatedOct 18, 2023 -
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reticulate Public
Forked from rstudio/reticulateR Interface to Python
R Apache License 2.0 UpdatedJan 27, 2023 -
pangenome Public
Forked from nf-core/pangenomeRenders a collection of sequences into a pangenome graph.
Nextflow MIT License UpdatedOct 4, 2022 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedJul 1, 2022 -
noodles Public
Forked from zaeleus/noodlesBioinformatics I/O libraries in Rust
Rust MIT License UpdatedMar 29, 2022 -
TRG-ImageProcessing Public
Forked from Gregor-Mendel-Institute/TRG-ImageProcessingSwarts Lab CNN stuff
Python UpdatedFeb 3, 2022 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 28, 2021 -
slurm-utils Public
Forked from birc-aeh/slurm-utilsA few utilities for use on a SLURM cluster
Python MIT License UpdatedJul 20, 2021 -
GWAS-nf Public
Nextflow pipeline to run genome wide association studies using limix
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedApr 20, 2021 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedApr 6, 2021 -
methylseq Public
Forked from nf-core/methylseqMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Nextflow MIT License UpdatedMar 27, 2021 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedMar 26, 2021 -
singularity-jupyterlab-minimal Public
Forked from CLIP-HPC/singularity-jupyterlab-minimalminimall Jupyterlab environment for CLIP, conda based
Shell UpdatedMar 16, 2021 -
mamba Public
Forked from mamba-org/mambaThe Fast Cross-Platform Package Manager
C++ BSD 3-Clause "New" or "Revised" License UpdatedMar 1, 2021 -
limix Public
Forked from limix/limixLinear mixed model for genomic analyses.
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scikit-image-feedstock Public
Forked from conda-forge/scikit-image-feedstockA conda-smithy repository for scikit-image.
Shell BSD 3-Clause "New" or "Revised" License UpdatedApr 24, 2020 -
models Public
Forked from tensorflow/modelsModels and examples built with TensorFlow
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rna_seq_kallisto1 Public
Forked from Gregor-Mendel-Institute/rna_seq_kallisto1nextflow pipeline for single read rna-seq
Nextflow UpdatedNov 20, 2019 -
gwaR Public
Forked from Gregor-Mendel-Institute/gwaRA collection of R functions to conduct GWAS analysis (in arabidopsis gwaRabidopsis)
R MIT License UpdatedOct 25, 2019 -
oeawai Public
Forked from WolfgangWaltenberger/oeawaiMaterial of the ÖAW AI Summer School
Jupyter Notebook UpdatedAug 5, 2019 -
hlatyping Public
Forked from nf-core/hlatypingPrecision HLA typing from next-generation sequencing data
Nextflow MIT License UpdatedApr 28, 2019