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Phyletica Lab: Exploring biodiversification

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  1. ecoevolity ecoevolity Public

    Estimating evolutionary coevality

    C++ 8 2

  2. lab-protocols lab-protocols Public

    Laboratory protocols used in the Phyletica Lab at Auburn University

    6 1

  3. SumTimes SumTimes Public

    Tool for estimating the probability of divergence-time scenarios from posterior samples of trees.

    Python 1 1

  4. pycoevolity pycoevolity Public

    A python package for summarizing the output of Ecoevolity

    Python 1

  5. gekgo gekgo Public

    Comparative phylogenetics of Philippine gekkonids

    HTML 1

  6. abc-glm-marginal-test abc-glm-marginal-test Public

    Simulation-based test of general linear model marginal likelihood method

    Shell 1

Repositories

Showing 10 of 28 repositories
  • pycoevolity Public

    A python package for summarizing the output of Ecoevolity

    phyletica/pycoevolity’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Dec 20, 2024
  • ecoevolity-model-prior Public

    Analyses exploring the behavior of new comparative biogeographical model priors.

    phyletica/ecoevolity-model-prior’s past year of commit activity
    Shell 1 0 0 0 Updated Dec 20, 2024
  • codiv-sanger-bake-off-tex Public

    TeX files for the Phyletica Lab project at http://phyletica.org/codiv-sanger-bake-off

    phyletica/codiv-sanger-bake-off-tex’s past year of commit activity
    TeX 0 0 0 0 Updated Dec 11, 2024
  • SDSDsim Public

    Simulating trees under a state-dependent birth-death process with shared and divergences

    phyletica/SDSDsim’s past year of commit activity
    Python 0 0 0 0 Updated Nov 21, 2024
  • ecoevolity Public

    Estimating evolutionary coevality

    phyletica/ecoevolity’s past year of commit activity
    C++ 8 GPL-3.0 2 0 0 Updated Oct 22, 2024
  • codiv-sanger-bake-off Public

    Comparing approximate and full-likelihood approaches to estimating temporal clustering of divergence times among taxa.

    phyletica/codiv-sanger-bake-off’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 8, 2024
  • ecoevolity-model-prior-tex Public

    TeX files for the Phyletica Lab project at http://phyletica.org/ecoevolity-model-prior

    phyletica/ecoevolity-model-prior-tex’s past year of commit activity
    TeX 0 0 0 0 Updated Nov 17, 2023
  • hmmer Public Forked from EddyRivasLab/hmmer

    HMMER: biological sequence analysis using profile HMMs (fork to report forward and Viterbi scores)

    phyletica/hmmer’s past year of commit activity
    C 0 70 0 0 Updated Jul 12, 2023
  • phyletica.github.io Public

    phyletica.github.io

    phyletica/phyletica.github.io’s past year of commit activity
    HTML 0 2 0 0 Updated Dec 1, 2022
  • lab-protocols Public

    Laboratory protocols used in the Phyletica Lab at Auburn University

    phyletica/lab-protocols’s past year of commit activity
    6 1 0 0 Updated Nov 8, 2022
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