Packaging to follow Mathworks recommended packaging practices

piermorel · Jun 24, 2024 · ed70b11 · ed70b11
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diff --git a/gramm.prj b/gramm.prj
diff --git a/@gramm/axe_property.m → gramm/@gramm/axe_property.m b/@gramm/axe_property.m → gramm/@gramm/axe_property.m
diff --git a/@gramm/coord_flip.m → gramm/@gramm/coord_flip.m b/@gramm/coord_flip.m → gramm/@gramm/coord_flip.m
diff --git a/@gramm/draw.m → gramm/@gramm/draw.m b/@gramm/draw.m → gramm/@gramm/draw.m
diff --git a/@gramm/export.m → gramm/@gramm/export.m b/@gramm/export.m → gramm/@gramm/export.m
diff --git a/@gramm/facet_grid.m → gramm/@gramm/facet_grid.m b/@gramm/facet_grid.m → gramm/@gramm/facet_grid.m
diff --git a/@gramm/facet_wrap.m → gramm/@gramm/facet_wrap.m b/@gramm/facet_wrap.m → gramm/@gramm/facet_wrap.m
diff --git a/@gramm/fig.m → gramm/@gramm/fig.m b/@gramm/fig.m → gramm/@gramm/fig.m
diff --git a/@gramm/geom_abline.m → gramm/@gramm/geom_abline.m b/@gramm/geom_abline.m → gramm/@gramm/geom_abline.m
diff --git a/@gramm/geom_bar.m → gramm/@gramm/geom_bar.m b/@gramm/geom_bar.m → gramm/@gramm/geom_bar.m
diff --git a/@gramm/geom_count.m → gramm/@gramm/geom_count.m b/@gramm/geom_count.m → gramm/@gramm/geom_count.m
diff --git a/@gramm/geom_funline.m → gramm/@gramm/geom_funline.m b/@gramm/geom_funline.m → gramm/@gramm/geom_funline.m
diff --git a/@gramm/geom_hline.m → gramm/@gramm/geom_hline.m b/@gramm/geom_hline.m → gramm/@gramm/geom_hline.m
diff --git a/@gramm/geom_interval.m → gramm/@gramm/geom_interval.m b/@gramm/geom_interval.m → gramm/@gramm/geom_interval.m
diff --git a/@gramm/geom_jitter.m → gramm/@gramm/geom_jitter.m b/@gramm/geom_jitter.m → gramm/@gramm/geom_jitter.m
diff --git a/@gramm/geom_label.m → gramm/@gramm/geom_label.m b/@gramm/geom_label.m → gramm/@gramm/geom_label.m
diff --git a/@gramm/geom_line.m → gramm/@gramm/geom_line.m b/@gramm/geom_line.m → gramm/@gramm/geom_line.m
diff --git a/@gramm/geom_point.m → gramm/@gramm/geom_point.m b/@gramm/geom_point.m → gramm/@gramm/geom_point.m
diff --git a/@gramm/geom_polygon.m → gramm/@gramm/geom_polygon.m b/@gramm/geom_polygon.m → gramm/@gramm/geom_polygon.m
diff --git a/@gramm/geom_raster.m → gramm/@gramm/geom_raster.m b/@gramm/geom_raster.m → gramm/@gramm/geom_raster.m
diff --git a/@gramm/geom_swarm.m → gramm/@gramm/geom_swarm.m b/@gramm/geom_swarm.m → gramm/@gramm/geom_swarm.m
diff --git a/@gramm/geom_vline.m → gramm/@gramm/geom_vline.m b/@gramm/geom_vline.m → gramm/@gramm/geom_vline.m
diff --git a/@gramm/gramm.m → gramm/@gramm/gramm.m b/@gramm/gramm.m → gramm/@gramm/gramm.m
diff --git a/@gramm/no_legend.m → gramm/@gramm/no_legend.m b/@gramm/no_legend.m → gramm/@gramm/no_legend.m
diff --git a/@gramm/private/LICENSE ColorBrewer.txt → gramm/@gramm/private/LICENSE ColorBrewer.txt b/@gramm/private/LICENSE ColorBrewer.txt → gramm/@gramm/private/LICENSE ColorBrewer.txt
diff --git a/@gramm/private/comb.m → gramm/@gramm/private/comb.m b/@gramm/private/comb.m → gramm/@gramm/private/comb.m
diff --git a/@gramm/private/combnan.m → gramm/@gramm/private/combnan.m b/@gramm/private/combnan.m → gramm/@gramm/private/combnan.m
diff --git a/@gramm/private/dodge_comp.m → gramm/@gramm/private/dodge_comp.m b/@gramm/private/dodge_comp.m → gramm/@gramm/private/dodge_comp.m
diff --git a/@gramm/private/dodger.m → gramm/@gramm/private/dodger.m b/@gramm/private/dodger.m → gramm/@gramm/private/dodger.m
diff --git a/@gramm/private/draw_polar_axes.m → gramm/@gramm/private/draw_polar_axes.m b/@gramm/private/draw_polar_axes.m → gramm/@gramm/private/draw_polar_axes.m
diff --git a/@gramm/private/draw_polygons.m → gramm/@gramm/private/draw_polygons.m b/@gramm/private/draw_polygons.m → gramm/@gramm/private/draw_polygons.m
diff --git a/@gramm/private/fill_abline.m → gramm/@gramm/private/fill_abline.m b/@gramm/private/fill_abline.m → gramm/@gramm/private/fill_abline.m
diff --git a/@gramm/private/fill_gradient_legend.m → gramm/@gramm/private/fill_gradient_legend.m b/@gramm/private/fill_gradient_legend.m → gramm/@gramm/private/fill_gradient_legend.m
diff --git a/@gramm/private/fill_legend.m → gramm/@gramm/private/fill_legend.m b/@gramm/private/fill_legend.m → gramm/@gramm/private/fill_legend.m
diff --git a/@gramm/private/get_colormap.m → gramm/@gramm/private/get_colormap.m b/@gramm/private/get_colormap.m → gramm/@gramm/private/get_colormap.m
diff --git a/@gramm/private/multi_sel.m → gramm/@gramm/private/multi_sel.m b/@gramm/private/multi_sel.m → gramm/@gramm/private/multi_sel.m
diff --git a/@gramm/private/my_addParameter.m → gramm/@gramm/private/my_addParameter.m b/@gramm/private/my_addParameter.m → gramm/@gramm/private/my_addParameter.m
diff --git a/@gramm/private/my_errorbar.m → gramm/@gramm/private/my_errorbar.m b/@gramm/private/my_errorbar.m → gramm/@gramm/private/my_errorbar.m
diff --git a/@gramm/private/my_histcounts.m → gramm/@gramm/private/my_histcounts.m b/@gramm/private/my_histcounts.m → gramm/@gramm/private/my_histcounts.m
diff --git a/@gramm/private/my_histplot.m → gramm/@gramm/private/my_histplot.m b/@gramm/private/my_histplot.m → gramm/@gramm/private/my_histplot.m
diff --git a/@gramm/private/my_tightplot.m → gramm/@gramm/private/my_tightplot.m b/@gramm/private/my_tightplot.m → gramm/@gramm/private/my_tightplot.m
diff --git a/@gramm/private/pa_LCH2RGB.m → gramm/@gramm/private/pa_LCH2RGB.m b/@gramm/private/pa_LCH2RGB.m → gramm/@gramm/private/pa_LCH2RGB.m
diff --git a/@gramm/private/padded_cell2mat.m → gramm/@gramm/private/padded_cell2mat.m b/@gramm/private/padded_cell2mat.m → gramm/@gramm/private/padded_cell2mat.m
diff --git a/@gramm/private/parse_aes.m → gramm/@gramm/private/parse_aes.m b/@gramm/private/parse_aes.m → gramm/@gramm/private/parse_aes.m
diff --git a/@gramm/private/parse_fill.m → gramm/@gramm/private/parse_fill.m b/@gramm/private/parse_fill.m → gramm/@gramm/private/parse_fill.m
diff --git a/@gramm/private/plotci.m → gramm/@gramm/private/plotci.m b/@gramm/private/plotci.m → gramm/@gramm/private/plotci.m
diff --git a/@gramm/private/point_patch.m → gramm/@gramm/private/point_patch.m b/@gramm/private/point_patch.m → gramm/@gramm/private/point_patch.m
diff --git a/@gramm/private/pval_to_star.m → gramm/@gramm/private/pval_to_star.m b/@gramm/private/pval_to_star.m → gramm/@gramm/private/pval_to_star.m
diff --git a/@gramm/private/select_aes.m → gramm/@gramm/private/select_aes.m b/@gramm/private/select_aes.m → gramm/@gramm/private/select_aes.m
diff --git a/@gramm/private/to_polar.m → gramm/@gramm/private/to_polar.m b/@gramm/private/to_polar.m → gramm/@gramm/private/to_polar.m
diff --git a/@gramm/private/unique_and_sort.m → gramm/@gramm/private/unique_and_sort.m b/@gramm/private/unique_and_sort.m → gramm/@gramm/private/unique_and_sort.m
diff --git a/@gramm/private/unique_no_nan.m → gramm/@gramm/private/unique_no_nan.m b/@gramm/private/unique_no_nan.m → gramm/@gramm/private/unique_no_nan.m
diff --git a/@gramm/private/validate_aes.m → gramm/@gramm/private/validate_aes.m b/@gramm/private/validate_aes.m → gramm/@gramm/private/validate_aes.m
diff --git a/@gramm/redraw.m → gramm/@gramm/redraw.m b/@gramm/redraw.m → gramm/@gramm/redraw.m
diff --git a/@gramm/set_color_options.m → gramm/@gramm/set_color_options.m b/@gramm/set_color_options.m → gramm/@gramm/set_color_options.m
diff --git a/@gramm/set_continuous_color.m → gramm/@gramm/set_continuous_color.m b/@gramm/set_continuous_color.m → gramm/@gramm/set_continuous_color.m
diff --git a/@gramm/set_datetick.m → gramm/@gramm/set_datetick.m b/@gramm/set_datetick.m → gramm/@gramm/set_datetick.m
diff --git a/@gramm/set_layout_options.m → gramm/@gramm/set_layout_options.m b/@gramm/set_layout_options.m → gramm/@gramm/set_layout_options.m
diff --git a/@gramm/set_limit_extra.m → gramm/@gramm/set_limit_extra.m b/@gramm/set_limit_extra.m → gramm/@gramm/set_limit_extra.m
diff --git a/@gramm/set_line_options.m → gramm/@gramm/set_line_options.m b/@gramm/set_line_options.m → gramm/@gramm/set_line_options.m
diff --git a/@gramm/set_names.m → gramm/@gramm/set_names.m b/@gramm/set_names.m → gramm/@gramm/set_names.m
diff --git a/@gramm/set_order_options.m → gramm/@gramm/set_order_options.m b/@gramm/set_order_options.m → gramm/@gramm/set_order_options.m
diff --git a/@gramm/set_point_options.m → gramm/@gramm/set_point_options.m b/@gramm/set_point_options.m → gramm/@gramm/set_point_options.m
diff --git a/@gramm/set_polar.m → gramm/@gramm/set_polar.m b/@gramm/set_polar.m → gramm/@gramm/set_polar.m
diff --git a/@gramm/set_stat_options.m → gramm/@gramm/set_stat_options.m b/@gramm/set_stat_options.m → gramm/@gramm/set_stat_options.m
diff --git a/@gramm/set_text_options.m → gramm/@gramm/set_text_options.m b/@gramm/set_text_options.m → gramm/@gramm/set_text_options.m
diff --git a/@gramm/set_title.m → gramm/@gramm/set_title.m b/@gramm/set_title.m → gramm/@gramm/set_title.m
diff --git a/@gramm/stat_bin.m → gramm/@gramm/stat_bin.m b/@gramm/stat_bin.m → gramm/@gramm/stat_bin.m
diff --git a/@gramm/stat_bin2d.m → gramm/@gramm/stat_bin2d.m b/@gramm/stat_bin2d.m → gramm/@gramm/stat_bin2d.m
diff --git a/@gramm/stat_boxplot.m → gramm/@gramm/stat_boxplot.m b/@gramm/stat_boxplot.m → gramm/@gramm/stat_boxplot.m
diff --git a/@gramm/stat_cornerhist.m → gramm/@gramm/stat_cornerhist.m b/@gramm/stat_cornerhist.m → gramm/@gramm/stat_cornerhist.m
diff --git a/@gramm/stat_density.m → gramm/@gramm/stat_density.m b/@gramm/stat_density.m → gramm/@gramm/stat_density.m
diff --git a/@gramm/stat_ellipse.m → gramm/@gramm/stat_ellipse.m b/@gramm/stat_ellipse.m → gramm/@gramm/stat_ellipse.m
diff --git a/@gramm/stat_fit.m → gramm/@gramm/stat_fit.m b/@gramm/stat_fit.m → gramm/@gramm/stat_fit.m
diff --git a/@gramm/stat_glm.m → gramm/@gramm/stat_glm.m b/@gramm/stat_glm.m → gramm/@gramm/stat_glm.m
diff --git a/@gramm/stat_qq.m → gramm/@gramm/stat_qq.m b/@gramm/stat_qq.m → gramm/@gramm/stat_qq.m
diff --git a/@gramm/stat_smooth.m → gramm/@gramm/stat_smooth.m b/@gramm/stat_smooth.m → gramm/@gramm/stat_smooth.m
diff --git a/@gramm/stat_summary.m → gramm/@gramm/stat_summary.m b/@gramm/stat_summary.m → gramm/@gramm/stat_summary.m
diff --git a/@gramm/stat_violin.m → gramm/@gramm/stat_violin.m b/@gramm/stat_violin.m → gramm/@gramm/stat_violin.m
diff --git a/@gramm/update.m → gramm/@gramm/update.m b/@gramm/update.m → gramm/@gramm/update.m
diff --git a/demos.xml → gramm/demos.xml b/demos.xml → gramm/demos.xml
diff --git a/doc/GettingStarted.mlx → gramm/doc/GettingStarted.mlx b/doc/GettingStarted.mlx → gramm/doc/GettingStarted.mlx
diff --git a/example_data.mat → gramm/example_data.mat b/example_data.mat → gramm/example_data.mat
diff --git a/example_spectra.mat → gramm/example_spectra.mat b/example_spectra.mat → gramm/example_spectra.mat
diff --git a/examples.m → gramm/examples/examples.m b/examples.m → gramm/examples/examples.m
diff --git a/functionSignatures.json → gramm/functionSignatures.json b/functionSignatures.json → gramm/functionSignatures.json
diff --git a/gramm/html/GettingStarted.html b/gramm/html/GettingStarted.html
diff --git a/gramm/html/cheat_sheet.html b/gramm/html/cheat_sheet.html
@@ -0,0 +1,21 @@
+<!DOCTYPE html>
+<html>
+<head>
+    <title>gramm cheat sheet pdf</title>
+    <style>
+        html, body {
+            margin: 0;
+            padding: 0;
+            height: 100%;
+            width: 100%;
+        }
+        .pdf-container {
+            width: 100%;
+            height: 100%;
+        }
+    </style>
+</head>
+<body>
+    <embed src="gramm cheat sheet.pdf" type="application/pdf" class="pdf-container">
+</body>
+</html>
diff --git a/html/examples.html → gramm/html/examples.html b/html/examples.html → gramm/html/examples.html
diff --git a/html/examples.png → gramm/html/examples.png b/html/examples.png → gramm/html/examples.png
diff --git a/html/examples_01.png → gramm/html/examples_01.png b/html/examples_01.png → gramm/html/examples_01.png
diff --git a/html/examples_02.png → gramm/html/examples_02.png b/html/examples_02.png → gramm/html/examples_02.png
diff --git a/html/examples_03.png → gramm/html/examples_03.png b/html/examples_03.png → gramm/html/examples_03.png
diff --git a/html/examples_04.png → gramm/html/examples_04.png b/html/examples_04.png → gramm/html/examples_04.png
diff --git a/html/examples_05.png → gramm/html/examples_05.png b/html/examples_05.png → gramm/html/examples_05.png
diff --git a/html/examples_06.png → gramm/html/examples_06.png b/html/examples_06.png → gramm/html/examples_06.png
diff --git a/html/examples_07.png → gramm/html/examples_07.png b/html/examples_07.png → gramm/html/examples_07.png
diff --git a/html/examples_08.png → gramm/html/examples_08.png b/html/examples_08.png → gramm/html/examples_08.png
diff --git a/html/examples_09.png → gramm/html/examples_09.png b/html/examples_09.png → gramm/html/examples_09.png
diff --git a/html/examples_10.png → gramm/html/examples_10.png b/html/examples_10.png → gramm/html/examples_10.png
diff --git a/html/examples_11.png → gramm/html/examples_11.png b/html/examples_11.png → gramm/html/examples_11.png
diff --git a/html/examples_12.png → gramm/html/examples_12.png b/html/examples_12.png → gramm/html/examples_12.png
diff --git a/html/examples_13.png → gramm/html/examples_13.png b/html/examples_13.png → gramm/html/examples_13.png
diff --git a/html/examples_14.png → gramm/html/examples_14.png b/html/examples_14.png → gramm/html/examples_14.png
diff --git a/html/examples_15.png → gramm/html/examples_15.png b/html/examples_15.png → gramm/html/examples_15.png
diff --git a/html/examples_16.png → gramm/html/examples_16.png b/html/examples_16.png → gramm/html/examples_16.png
diff --git a/html/examples_17.png → gramm/html/examples_17.png b/html/examples_17.png → gramm/html/examples_17.png
diff --git a/html/examples_18.png → gramm/html/examples_18.png b/html/examples_18.png → gramm/html/examples_18.png
diff --git a/html/examples_19.png → gramm/html/examples_19.png b/html/examples_19.png → gramm/html/examples_19.png
diff --git a/html/examples_20.png → gramm/html/examples_20.png b/html/examples_20.png → gramm/html/examples_20.png
diff --git a/html/examples_21.png → gramm/html/examples_21.png b/html/examples_21.png → gramm/html/examples_21.png
diff --git a/html/examples_22.png → gramm/html/examples_22.png b/html/examples_22.png → gramm/html/examples_22.png
diff --git a/html/examples_23.png → gramm/html/examples_23.png b/html/examples_23.png → gramm/html/examples_23.png
diff --git a/html/examples_24.png → gramm/html/examples_24.png b/html/examples_24.png → gramm/html/examples_24.png
diff --git a/html/examples_25.png → gramm/html/examples_25.png b/html/examples_25.png → gramm/html/examples_25.png
diff --git a/html/examples_26.png → gramm/html/examples_26.png b/html/examples_26.png → gramm/html/examples_26.png
diff --git a/html/examples_27.png → gramm/html/examples_27.png b/html/examples_27.png → gramm/html/examples_27.png
diff --git a/html/examples_28.png → gramm/html/examples_28.png b/html/examples_28.png → gramm/html/examples_28.png
diff --git a/html/examples_29.png → gramm/html/examples_29.png b/html/examples_29.png → gramm/html/examples_29.png
diff --git a/html/examples_30.png → gramm/html/examples_30.png b/html/examples_30.png → gramm/html/examples_30.png
diff --git a/html/examples_31.png → gramm/html/examples_31.png b/html/examples_31.png → gramm/html/examples_31.png
diff --git a/html/examples_32.png → gramm/html/examples_32.png b/html/examples_32.png → gramm/html/examples_32.png
diff --git a/html/examples_33.png → gramm/html/examples_33.png b/html/examples_33.png → gramm/html/examples_33.png
diff --git a/html/examples_34.png → gramm/html/examples_34.png b/html/examples_34.png → gramm/html/examples_34.png
diff --git a/html/examples_35.png → gramm/html/examples_35.png b/html/examples_35.png → gramm/html/examples_35.png
diff --git a/html/examples_36.png → gramm/html/examples_36.png b/html/examples_36.png → gramm/html/examples_36.png
diff --git a/html/examples_37.png → gramm/html/examples_37.png b/html/examples_37.png → gramm/html/examples_37.png
diff --git a/html/examples_38.png → gramm/html/examples_38.png b/html/examples_38.png → gramm/html/examples_38.png
diff --git a/html/examples_39.png → gramm/html/examples_39.png b/html/examples_39.png → gramm/html/examples_39.png
diff --git a/html/examples_40.png → gramm/html/examples_40.png b/html/examples_40.png → gramm/html/examples_40.png
diff --git a/html/examples_41.png → gramm/html/examples_41.png b/html/examples_41.png → gramm/html/examples_41.png
diff --git a/html/examples_42.png → gramm/html/examples_42.png b/html/examples_42.png → gramm/html/examples_42.png
diff --git a/html/examples_43.png → gramm/html/examples_43.png b/html/examples_43.png → gramm/html/examples_43.png
diff --git a/html/examples_44.png → gramm/html/examples_44.png b/html/examples_44.png → gramm/html/examples_44.png
diff --git a/html/examples_45.png → gramm/html/examples_45.png b/html/examples_45.png → gramm/html/examples_45.png
diff --git a/gramm cheat sheet.pdf → gramm/html/gramm cheat sheet.pdf b/gramm cheat sheet.pdf → gramm/html/gramm cheat sheet.pdf
diff --git a/gramm/html/gramm_cheat_sheet.html b/gramm/html/gramm_cheat_sheet.html
@@ -0,0 +1,21 @@
+<!DOCTYPE html>
+<html>
+<head>
+    <title>gramm cheat sheet pdf</title>
+    <style>
+        html, body {
+            margin: 0;
+            padding: 0;
+            height: 100%;
+            width: 100%;
+        }
+        .pdf-container {
+            width: 100%;
+            height: 100%;
+        }
+    </style>
+</head>
+<body>
+    <embed src="gramm cheat sheet.pdf" type="application/pdf" class="pdf-container">
+</body>
+</html>
diff --git a/gramm/html/helptoc.xml b/gramm/html/helptoc.xml
@@ -0,0 +1,28 @@
+<?xml version='1.0' encoding="utf-8"?>
+
+<toc version="2.0">
+<!-- First tocitem specifies top level in Help browser Contents pane -->
+<!-- This can be a roadmap page, as shown below, or a content page -->
+    <tocitem target="GettingStarted.html"> Getting Started example
+     <tocitem target="gramm_cheat_sheet.html"> Cheat sheet
+    </tocitem>
+    <tocitem target="examples.html">Full examples for gramm
+        <!-- Nest tocitems to create hierarchical entries in  Contents-->
+        <!-- To include icons, use the following syntax for tocitems: -->
+        <!-- <tocitem target="foo.html" image="HelpIcon.NAME"> -->
+        <!-- Title-of-Section </tocitem> -->
+        <!-- where NAME is one of the following (use capital letters): -->
+        <!-- FUNCTION, USER_GUIDE, EXAMPLES, BLOCK, GETTING_STARTED, -->
+        <!-- DEMOS, RELEASE_NOTES --> 
+        <!-- Icon images used for these entries are also stored in -->
+        <!-- matlabroot/toolbox/matlab/icons -->
+        <!-- A Getting Started Guide usually comes first -->
+        <!-- Optional link or links to your or other Web sites -->
+
+    </tocitem>
+        <tocitem target="https://github.com/piermorel/gramm" 
+                 image="$toolbox/matlab/icons/webicon.gif">
+        gramm's github repository
+        </tocitem>
+    </tocitem>
+</toc>
diff --git a/gramm/info.xml b/gramm/info.xml
@@ -0,0 +1,25 @@
+<productinfo xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 
+    xsi:noNamespaceSchemaLocation="optional">
+    <?xml-stylesheet type="text/xsl"href="optional"?>
+    <!-- info.xml file for the mytoolbox toolbox -->
+    <!-- Version 1.0 -->
+    <!-- Copyright (date) (owner).-->
+
+    <!-- Supply the following six elements in the order specified -->
+    <!-- (Required) Release of MATLAB. Not currently used but required -->
+    <!-- to parse the file -->
+    <matlabrelease>R2018a</matlabrelease>
+    <!-- (Required) Title of toolbox. Appears in the Contents pane -->
+    <name>gramm</name>
+    <!-- (Required) Label for the toolbox. pick one: -->
+    <!-- matlab, toolbox, simulink, blockset, links_targets  -->
+    <type>toolbox</type>
+    <!-- (Required) Icon file to display in the Start button. Not currently used -->
+    <!-- but required to parse the file -->
+    <icon></icon>
+    <!-- (Required if you supply help) Relative path to help (HTML) folder -->
+    <help_location>./html</help_location>
+    <!-- (Required if you supply help) Icon used in the Help browser TOC -->
+    <!-- Ignored in R2015a and later -->
+    <help_contents_icon></help_contents_icon>
+</productinfo>