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download-refseq-genomes Public
Perl script to download genomes within a clade from NCBI Refseq
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score-assemblies-MIT Public
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
Python MIT License UpdatedAug 9, 2024 -
ont-assembly-snake-MIT Public
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.
bioinformatics snakemake bioinformatics-pipeline nanopore-sequencing snakemake-workflow bacterial-genome-analysisPython MIT License UpdatedAug 9, 2024 -
TBProfiler Public
Forked from jodyphelan/TBProfilerProfiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Python GNU General Public License v3.0 UpdatedAug 6, 2024 -
gh-actions Public
workflows for GitHub Actions
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deeperseq Public
Forked from theosanderson/deeperseqBrowse FASTQs for SARS-CoV-2 genomes from the SRA/ENA
JavaScript UpdatedAug 24, 2023 -
open-data-registry Public
Forked from awslabs/open-data-registryA registry of publicly available datasets on AWS
Python Apache License 2.0 UpdatedJun 26, 2023 -
docker-micromamba-shiny Public
A minimal example for an R Shiny app inside a Docker container using R packages via conda-forge + micromamba
R UpdatedApr 13, 2023 -
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r-ggstatsplot-feedstock Public
Forked from conda-forge/r-ggstatsplot-feedstockA conda-smithy repository for r-ggstatsplot.
Shell BSD 3-Clause "New" or "Revised" License UpdatedMar 13, 2023 -
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docker-backuppc Public
Forked from adferrand/docker-backuppcDocker container with BackupPC version 4.x/3.x based on Alpine distribution.
Shell MIT License UpdatedOct 8, 2022 -
stable-diffusion Public
Forked from CompVis/stable-diffusionJupyter Notebook Other UpdatedAug 31, 2022 -
illumina-assembly-snake Public
Snakemake wrapper for bacterial genome assembly from Illumina reads.
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taxonomy-tools Public
C++ tools for NCBI taxonomy tasks
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tapiriik Public
Forked from cpfair/tapiriiktapiriik keeps your fitness in sync
Python Apache License 2.0 UpdatedDec 29, 2021 -
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packCircles Public
C program for space-efficiently packing circles in a plane.
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dircolors-solarized Public
Forked from seebi/dircolors-solarizedThis is a repository of themes for GNU ls (configured via GNU dircolors) that support Ethan Schoonover’s Solarized color scheme.
Makefile MIT License UpdatedOct 20, 2020 -
LS_COLORS Public
Forked from trapd00r/LS_COLORSA collection of LS_COLORS definitions; needs your contribution!
Shell Other UpdatedOct 12, 2020 -
Filtlong Public
Forked from rrwick/Filtlongquality filtering tool for long reads
C++ GNU General Public License v3.0 UpdatedJul 17, 2020 -
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dht22-rpi Public
Forked from stephanGarland/dht22-rpiPython Mozilla Public License 2.0 UpdatedJun 7, 2020 -
raconnn Public
wrapper for running multiple assembly polishing rounds with racon
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biq Public
Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets