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92 Open 164 Closed
92 Open 164 Closed
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Issues list

Inquiry on Using Pooled Samples for Population History Inference with SMC++
#267 opened Nov 19, 2024 by JcWukkkk
does the input file VCF need to be filtered by linkage unbalanced LD?
#266 opened Oct 31, 2024 by chelisa
Installation recommendations
#265 opened Sep 18, 2024 by ericgonzalezs
2
vcf2smc
#264 opened Aug 25, 2024 by Risingsun93
5
Why does the SMC++ estimate produce significantly different results when I change the -d parameter?
#263 opened Aug 22, 2024 by caocaoBioInfo
smcpp.commands.vcf2smc WARNING Multiple entries found at 13 positions; skipped all but the first
#262 opened Jul 28, 2024 by Keerlllws
1
--missing-cutoff option is not completed working
#261 opened Jul 21, 2024 by ChenJuiYANG
How to use docker to deliver tasks instead of running locally
#260 opened May 8, 2024 by KKFFCC
1
How to evaluate Ne estimates with different parameters
#259 opened Apr 22, 2024 by djeffares
Running smc++ on genome with scaffold level assembly
#258 opened Jan 31, 2024 by ModiShrushti
FloatingPointError: divide by zero encountered in log
#257 opened Jan 30, 2024 by aguilar-gomez
vcf2smc with csi indexed mask file?
#256 opened Jan 5, 2024 by mc-er
Running about the parameter cv
#255 opened Nov 7, 2023 by tcd11221
PermissionError: [Errno 13] could not open variant (vcf) file
#254 opened Nov 3, 2023 by chenchengaaaaa
1
Conda install of smc++ version 0.0.0?
#253 opened Nov 2, 2023 by dmacguigan
2
Please add support for linux-aarch64 to the Conda package
#252 opened Nov 1, 2023 by martin-g
2
Cannot detect my simulated bottleneck
#250 opened Sep 28, 2023 by JaneeshBansal
1
RuntimeError: erroneous average coalescence time
#248 opened Sep 9, 2023 by danrans123
Questions about SMC++ plotting
#247 opened Jul 25, 2023 by jaurbanChicago
assertion error
#245 opened Jun 9, 2023 by ndussex
docker run smc++: NotImplementedError: seek not implemented in files compressed by method 1
#244 opened Jun 4, 2023 by xgdong
1
split --timepoints command is useless
#243 opened May 24, 2023 by xiaobaiymq
different --knots set, different results
#242 opened May 10, 2023 by lidanqi1990
smc++ estimate Error
#238 opened Feb 8, 2023 by lamlitman
1
error with new version 1.15.4
#236 opened Dec 1, 2022 by ndussex
ProTip! no:milestone will show everything without a milestone.