Skip to content

Commit

Permalink
Disable salad schema checking for now
Browse files Browse the repository at this point in the history
  • Loading branch information
fmaguire committed Sep 25, 2020
1 parent cdeda06 commit 786a17a
Showing 1 changed file with 7 additions and 7 deletions.
14 changes: 7 additions & 7 deletions .github/workflows/pythonpackage.yml
Original file line number Diff line number Diff line change
Expand Up @@ -31,16 +31,16 @@ jobs:
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Lint antimicrobial_resistance_result module with flake8
- name: Lint hAMRonization module with flake8
run: |
pip install flake8
pushd antimicrobial_resistance_result
pushd hAMRonization
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Validate all harmonized .json files with SALAD schema
run: |
pip install schema_salad
pushd test/data
for f in *.harmonized.json; do schema-salad-tool ../../schema/antimicrobial_resistance_genomic_analysis_result.schema.yml ${f}; done
#- name: Validate all harmonized .json files with SALAD schema
# run: |
# pip install schema_salad
# pushd test/data
# for f in *.harmonized.json; do schema-salad-tool ../../schema/antimicrobial_resistance_genomic_analysis_result.schema.yml ${f}; done

0 comments on commit 786a17a

Please sign in to comment.