implementation of SIGGRAPH 2020 paper 'A class of C2 interpolating Splines - cem yuksel'

Devon: An open-source pair programmer

Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)

An open-source platform for developing protein models beyond AlphaFold.

Conformational sampling for highly flexible proteins

P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching

Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)

Script tools for downloading, data preprocessing, data merging and standardizing for FDA Adverse Event Reporting System(FAERS) dataset.

Tools for data analysis for the FDA Adverse Event Reporting System (FAERS) dataset

Quantifying the nativeness of antibody sequences using long short-term memory networks

Takes in paired FASTA format antibody H/L chains for modelling in abYmod.org

Material to run the HADDOCK antibody-antigen modelling protocol

A python implementation of Antibody-GAN: a Generative Adversarial Network (GAN) for full variable framework antibody generation.

Repository for the manuscript ''Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time"

Antibody-Antigen Docking and Affinity Benchmark

Python code for predicting concentration-dependent viscosity behavior of monoclonal antibodies using intrinsic viscosity.

Quantifying the nativeness of antibody sequences using long short-term memory networks

Protein design and variant prediction using autoregressive generative models

Using language models to generate human antibodies

Assessing the impact of mutations on antibody-antigen binding affinity

software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"

Editor specifically for antibodies. Allows you to visualize antibodies, automatically recognize domains and more. Developed and open-sourced by Roche.

Machine learning models for antibody sequences in PyTorch