reaganman
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scientific_computing Public
Assignments from CSCI 5576 - High Performance Scientific Computing taught by Dr. Scott Runnels
UpdatedDec 24, 2024 -
reaganman.github.io Public
Forked from LeNPaul/MillennialA minimalist Jekyll theme for running a blog or publication powered by Jekyll and GitHub Pages
SCSS MIT License UpdatedDec 24, 2024 -
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mapping_cleaned_reads Public
Forked from KLab-UT/mapping_cleaned_readsOrientation to reference-based short-read mapping for advanced bioinformatics course at Utah Tech University
Shell UpdatedApr 27, 2024 -
filtering_variants Public
Forked from KLab-UT/filtering_variantsOrientation to filtering variants from a VCF file for advanced bioinformatics course at Utah Tech University
Shell UpdatedApr 25, 2024 -
trimming_raw_reads Public
Forked from KLab-UT/trimming_raw_readsOrientation to raw read trimming for advanced bioinformatics course at Utah Tech University
HTML UpdatedMar 2, 2024 -
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genomics-pipeline-intro Public
Forked from KLab-UT/genomics-pipeline-introIntroduction to basic genomics filetypes and processing techniques.
Shell UpdatedFeb 7, 2024 -
sequence-processing-intro Public
Forked from KLab-UT/sequence-processing-introCoding exercise on fundamentals of pipeline construction for advanced bioinformatics course at Utah Tech University
Python UpdatedJan 25, 2024 -
fold_tree Public
Forked from DessimozLab/fold_treesnakemake pipeline for creating trees from sequence sets
Jupyter Notebook MIT License UpdatedJan 18, 2024 -
order_me Public
A pipeline of bash and python scripts designed to track the evolution of a sequence of interest within a specified taxonomic group.
Python UpdatedDec 9, 2023 -
python-rsa Public
Python script implementing the RSA encryption and decryption protocol
Python UpdatedDec 9, 2023 -
recursive-factorials Public
Forked from rklabacka/recursive-factorialsCreate recursive function to calculate factorials and incorporate this into a problem examining a gene in a population
Python UpdatedNov 16, 2023 -
fr10_evolution Public
Forked from KLab-UT/fr10_evolutionExamining the diversity of the fr10 gene across organisms
Shell UpdatedOct 31, 2023 -
python-file-io Public
Forked from joaks1/python-file-ioLearning the basics of reading and writing files in Python.
Python UpdatedOct 18, 2023 -
python-tabular-data Public
Forked from joaks1/python-tabular-dataLearning to use Python packages to work with tabular data.
Python UpdatedOct 6, 2023 -
python-debugging Public
Forked from joaks1/python-debuggingLearning to use the Python debugger.
Python UpdatedSep 28, 2023 -
python-script-best-practice Public
Forked from joaks1/python-script-best-practiceAn exercise in Python best practices.
Python UpdatedSep 26, 2023 -
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au-bootcamp-git-intro Public
Forked from joaks1/au-bootcamp-git-introGit introduction for Auburn University Bioinformatics Bootcamp
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CHPC-intro Public
Forked from KLab-UT/CHPC-introAn introduction to the CHPC - specifically, logging onto a cluster and running scripts on compute nodes using the slurm workload manager
UpdatedMar 21, 2023 -
blast-QC Public
Forked from torkian/blast-QCA Quality Control filter and parser for NCBI BLAST XML results.
C MIT License UpdatedAug 21, 2020