Draw a dot plot from a paf alignment

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Phylogenetic orthology inference for comparative genomics

Accelerated BLAST compatible local sequence aligner.

A fast and resource-efficient genome graph genotyping tool

Genome-scale protein function classification

A pipeline used to identify different modes of duplicated gene pairs

Constructing a pangenome gene graph

This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

Whole Genome Alignment Tools

一个基于 electron 的音乐软件

《21个项目玩转深度学习———基于TensorFlow的实践详解》配套代码

Sequential regulatory activity predictions with deep convolutional neural networks.

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“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

an efficient Hi-C data processing pipeline

Performant Pythonic GenomicRanges

Tool to plot synteny and structural rearrangements between genomes

Tool for plotting sequencing data along genomic coordinates.

An integrated platform for modeling gene-regulatory dynamics and networks

Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum

🎯 ChIP peak Annotation, Comparison and Visualization

Python programs for processing GFF3 files

Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis

scripts used for processing and analyzing data in the article.