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Python package for applying deep learning to predict expression potential ('high' or 'low') directly from protein coding sequences (CDS).

Python 4 Updated Feb 26, 2023

Tool for deep mutational scanning experiments.

Python 48 13 Updated Mar 9, 2025

Draw RNA secondary structures in python.

Jupyter Notebook 47 16 Updated Sep 3, 2024

High-throughput Annotation of Modified Ribonucleotides -- HAMR

C 3 Updated Apr 19, 2016

Data science interview questions and answers

HTML 9,197 2,026 Updated Feb 19, 2025

add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

Jupyter Notebook 398 74 Updated Jun 2, 2022

Lab materials for the Full Stack Deep Learning Course

Jupyter Notebook 1,208 429 Updated Jun 14, 2022

Selenoprofiles is a pipeline for profile-based protein finding in genomes. It is suitable also (but not only) for selenoproteins

Python 4 Updated Nov 1, 2023

DE analysis module for Week3

HTML 66 104 Updated Jul 24, 2016

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

Jupyter Notebook 102 61 Updated Jul 1, 2022

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

381 367 Updated Jan 21, 2023

projects using galaxy, python, linux command line to analyze sequencing data

Python 54 36 Updated Oct 8, 2020

Stanford

Jupyter Notebook 283 319 Updated Mar 31, 2017