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Remove whitespace at end of lines.
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brianwalenz committed Aug 14, 2017
1 parent 8578316 commit ddf4768
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions src/pipelines/canu/OverlapMMap.pm
Original file line number Diff line number Diff line change
Expand Up @@ -90,10 +90,10 @@ sub mmapConfigure ($$$) {
} elsif ($numPacBioCorrected > 0) {
$parameters = "-x ava-pb -c -Hk21 -w14"; #tuned to find 1000bp 5% error
} elsif ($numNanoporeCorrected > 0) {
$parameters = "-x ava-ont -c -k17 -w11"; #tuned to find 1000bp 15% error
$parameters = "-x ava-ont -c -k17 -w11"; #tuned to find 1000bp 15% error
} else {
caFailiure("--ERROR: no know read types found in $base/$asm.gkpStore/libraries.txt")
}
}

print STDERR "--\n";
print STDERR "-- OVERLAPPER (mmap) (correction) with $parameters\n" if ($tag eq "cor");
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