New Packages and Update Scripts

.aliases

@@ -33,9 +33,9 @@ alias egrep='egrep --color=auto'
 alias sudo='sudo '
 
 # Get OS X Software Updates, and update installed Ruby gems, Homebrew, npm, and their installed packages
-alias update_all='sudo softwareupdate -i -a; npm install npm -g; npm update -g; sudo gem update --system; sudo gem update; brew -v update; brew -v upgrade --all; brew cleanup; brew cask cleanup; brew prune; brew doctor'
+alias update_all='sudo softwareupdate -i -a; npm install npm -g; npm update -g; sudo gem update --system; sudo gem update; brew -v update; brew -v upgrade --all; brew cleanup; brew cask cleanup; brew prune; brew doctor; conda update conda; pip install --upgrade pip'
 alias update_brew="brew -v update; brew -v upgrade --all; brew cleanup; brew cask cleanup; brew prune; brew doctor"
-alias pip_update_all='pip freeze --local | grep -v '^\-e' | cut -d = -f 1  | xargs -n1 pip install -U'
+alias update_python_all='pip install --upgrade pip; pip freeze --local | grep -v '^\-e' | cut -d = -f 1  | xargs -n1 pip install -U; conda update conda; conda update anaconda'
 
 # Show/hide hidden files in Finder
 alias show="defaults write com.apple.finder AppleShowAllFiles -bool true && killall Finder"

.bash_profile

@@ -1,13 +1,29 @@
-# Add `~/bin` to the `$PATH`
+# Add to the $PATH. Lower ones have higher priority.
+
+export GEM_HOME="$HOME/.gem:$PATH";
+export PATH="$GEM_HOME/bin:$PATH";
+
+export PATH="/usr/bin:$PATH";
+export PATH="/usr/sbin:$PATH";
+export PATH="/bin:$PATH";
+export PATH="/sbin:$PATH";
+export PATH="/usr/local/bin:$PATH";
+export PATH="/usr/local/sbin:$PATH";
+
+export PATH="/usr/local/git/bin:$PATH";
 export PATH="$HOME/bin:$PATH";
-export PATH="/usr/local/sbin:$PATH"
-export PATH="$(brew --prefix coreutils)/libexec/gnubin:$PATH"
+export PATH="$HOME/anaconda/bin:$PATH";
+export PATH="$(brew --prefix coreutils)/libexec/gnubin:$PATH";
+
+# Set Man Pages
+export MANPATH="$(brew --prefix coreutils)/libexec/gnuman:$MANPATH"
 
+# Set PATH for Finder-launched applications
+launchctl setenv PATH $PATH
 
 # Load the shell dotfiles, and then some:
-# * ~/.path can be used to extend `$PATH`.
-# * ~/.extra can be used for other settings you don’t want to commit.
-for file in ~/.{path,bash_prompt,exports,aliases,functions,private}; do
+# * ~/.private can be used for other settings you don’t want to commit.
+for file in ~/.{private,bash_prompt,exports,aliases,functions}; do
 	[ -r "$file" ] && [ -f "$file" ] && source "$file";
 done;
 unset file;

brew.sh

@@ -14,39 +14,64 @@ brew update
 # Upgrade any already-installed formulae.
 brew upgrade --all
 
+brew tap homebrew/dupes
+
 # Install GNU core utilities (those that come with OS X are outdated).
 # Don’t forget to add `$(brew --prefix coreutils)/libexec/gnubin` to `$PATH`.
 brew install coreutils
 sudo ln -s /usr/local/bin/gsha256sum /usr/local/bin/sha256sum
 
 # Install some other useful utilities like `sponge`.
 brew install moreutils
-# Install GNU `find`, `locate`, `updatedb`, and `xargs`, `g`-prefixed.
-brew install findutils
-# Install GNU `sed`, overwriting the built-in `sed`.
+
+# Install GNU `find`, `locate`, `updatedb`, and `xargs`.
+brew install findutils --with-default-names
+
+# Install other GNU utilities, overwriting the built-ins.
 brew install gnu-sed --with-default-names
+brew install gnu-tar --with-default-names
+brew install gnu-which --with-default-names
+brew install gnu-indent --with-default-names
+brew install gnutls --with-default-names
+brew install grep --with-default-names
+brew install binutils
+brew install diffutils
+brew install gawk
+brew install gzip
+brew install screen
+brew install watch
+brew install wdiff --with-gettext
+
+# Install `wget` with IRI support.
+brew install wget --with-iri
+
 # Install Bash 4.
 # Note: don’t forget to add `/usr/local/bin/bash` to `/etc/shells` before
 # running `chsh`.
 brew install bash
 brew tap homebrew/versions
 brew install bash-completion2
 
-# Install `wget` with IRI support.
-brew install wget --with-iri
-
 # Install more recent versions of some OS X tools.
 brew install vim --override-system-vi
 brew install homebrew/dupes/grep
 brew install homebrew/dupes/openssh
 brew install homebrew/dupes/screen
+brew install homebrew/dupes/lsof
 
 # Install other useful binaries.
 brew install git
 brew install speedtest_cli
 brew install ssh-copy-id
 brew install testssl
 brew install tree
+brew install ruby
+brew install openssh
+brew install rsync
+brew install gcc --enable-all-languages
+brew install htop
+brew install nmap
+brew install gzip
 
 # Remove outdated versions from the cellar.
 brew cleanup

install.sh

@@ -34,7 +34,10 @@ echo "...done"
 # move any existing dotfiles in ${homedir} to dotfiles_old directory, then create symlinks
 for file in ${files}; do
     echo "Moving any existing dotfiles from ${homedir} to ${olddir}"
-    mv ${homedir}/.${file} ${homedir}/dotfiles_old/
+    mv ${homedir}/.${file} ${olddir}/
     echo "Creating symlink to $file in home directory."
     ln -s ${dir}/.${file} ${homedir}/.${file}
-done
+done
+
+# Run the Homebrew Script
+./brew.sh