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@rnajena

RNA Bioinformatics and High-Throughput Analysis Jena

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  1. bertax bertax Public

    Taxonomic classification of DNA sequences

    Python 52 9

  2. poseidon poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    C 37 9

  3. vidhop vidhop Public

    VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

    Python 20 9

  4. EpiDope EpiDope Public

    Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

    Python 16 6

  5. viralclust viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 16 5

  6. read5 read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    Python 10 1

Repositories

Showing 10 of 24 repositories
  • sugar Public

    S*R -- A Python framework for bioinformatics

    Python 2 MIT 0 0 0 Updated Mar 26, 2025
  • read5_ont Public

    Wrapper to read fast5 and pod5 files.

    Python 1 GPL-3.0 1 0 0 Updated Mar 25, 2025
  • anchorna Public

    Find anchors in RNA/DNA sequences

    Python 3 MIT 0 0 0 Updated Mar 25, 2025
  • read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    Python 10 GPL-3.0 1 1 0 Updated Mar 25, 2025
  • dynamont Public
    C++ 3 GPL-3.0 1 0 0 Updated Mar 25, 2025
  • SweetSynteny Public
    Python 0 MIT 0 0 0 Updated Mar 21, 2025
  • diffMONT Public

    diffONT is a python-based tool for predicting methylation-specific PCR (MSP) primers, based on Nanopore sequencing data. Given mutliple bedmethyl files, diffONT detects methylation specific PCR primer regions, which can distinguish between two groups of samples (originally cancer patients vs. healthy controls).

    Python 1 MIT 0 0 0 Updated Mar 20, 2025
  • poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    C 37 MIT 9 8 (1 issue needs help) 0 Updated Feb 21, 2025
  • viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 16 GPL-3.0 5 7 0 Updated Feb 6, 2025
  • RNAswarm Public

    RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

    Python 2 MIT 1 2 0 Updated Jan 3, 2025