Run examples on CI only

ropensci · Jul 18, 2022 · 1d58ba4 · 1d58ba4
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Showing 4 changed files with 60 additions and 58 deletions.
diff --git a/R/extract_tracelog_filename_from_beast2_input_file.R b/R/extract_tracelog_filename_from_beast2_input_file.R
@@ -4,28 +4,29 @@
 #' @inheritParams default_params_doc
 #' @return the name of the tracelog file
 #' @examples
-#' check_empty_beaustier_folders()
+#' if (beautier::is_on_ci())
+#' {
 #'
-#' beast2_input_filename <- get_beastier_tempfilename()
-#' tracelog_filename <- get_beastier_tempfilename()
-#' beautier::create_beast2_input_file_from_model(
-#'   input_filename = beautier::get_beautier_path("test_output_0.fas"),
-#'   output_filename = beast2_input_filename,
-#'   inference_model = beautier::create_inference_model(
-#'     mcmc = beautier::create_mcmc(
-#'       tracelog = beautier::create_tracelog(
-#'         filename = tracelog_filename
+#'   beast2_input_filename <- get_beastier_tempfilename()
+#'   tracelog_filename <- get_beastier_tempfilename()
+#'   beautier::create_beast2_input_file_from_model(
+#'     input_filename = beautier::get_beautier_path("test_output_0.fas"),
+#'     output_filename = beast2_input_filename,
+#'     inference_model = beautier::create_inference_model(
+#'       mcmc = beautier::create_mcmc(
+#'         tracelog = beautier::create_tracelog(
+#'           filename = tracelog_filename
+#'         )
 #'       )
 #'     )
 #'   )
-#' )
-#' extract_tracelog_filename_from_beast2_input_file(
-#'   input_filename = beast2_input_filename
-#' )
-#' file.remove(beast2_input_filename)
+#'   extract_tracelog_filename_from_beast2_input_file(
+#'     input_filename = beast2_input_filename
+#'   )
+#'   file.remove(beast2_input_filename)
 #'
-#' remove_beaustier_folders()
-#' check_empty_beaustier_folders()
+#'   remove_beaustier_folders()
+#' }
 #' @author Richèl J.C. Bilderbeek
 #' @export
 extract_tracelog_filename_from_beast2_input_file <- function( # nolint indeed a long internal function name

diff --git a/R/extract_treelog_filename_from_beast2_input_file.R b/R/extract_treelog_filename_from_beast2_input_file.R
@@ -4,21 +4,21 @@
 #' @inheritParams default_params_doc
 #' @return the treelog filename for a BEAST2 input file
 #' @examples
-#' check_empty_beaustier_folders()
+#' if (beautier::is_on_ci()) {
 #'
-#' beast2_input_filename <- get_beastier_tempfilename()
+#'   beast2_input_filename <- get_beastier_tempfilename()
 #'
-#' beautier::create_beast2_input_file_from_model(
-#'   input_filename = beautier::get_beautier_path("test_output_0.fas"),
-#'   output_filename = beast2_input_filename
-#' )
-#' extract_treelog_filename_from_beast2_input_file(
-#'   input_filename = beast2_input_filename
-#' )
-#' file.remove(beast2_input_filename)
+#'   beautier::create_beast2_input_file_from_model(
+#'     input_filename = beautier::get_beautier_path("test_output_0.fas"),
+#'     output_filename = beast2_input_filename
+#'   )
+#'   extract_treelog_filename_from_beast2_input_file(
+#'     input_filename = beast2_input_filename
+#'   )
+#'   file.remove(beast2_input_filename)
 #'
-#' remove_beaustier_folders()
-#' check_empty_beaustier_folders()
+#'   remove_beaustier_folders()
+#' }
 #' @author Richèl J.C. Bilderbeek
 #' @export
 extract_treelog_filename_from_beast2_input_file <- function( # nolint indeed a long function name

diff --git a/man/extract_tracelog_filename_from_beast2_input_file.Rd b/man/extract_tracelog_filename_from_beast2_input_file.Rd
diff --git a/man/extract_treelog_filename_from_beast2_input_file.Rd b/man/extract_treelog_filename_from_beast2_input_file.Rd