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imagemagick dep
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Pachamaltese authored Oct 3, 2019
1 parent 5005c0b commit 8dd41b1
Showing 1 changed file with 94 additions and 94 deletions.
188 changes: 94 additions & 94 deletions scripts/01-packages.sh
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Expand Up @@ -17,7 +17,7 @@ apt-get -y upgrade
apt-get -y install gdebi-core

# requisites for R packages
apt-get -y install libxml2-dev libssl-dev libcurl4-openssl-dev libudunits2-dev gdal-bin libgdal-dev libproj-dev libv8-dev default-jdk
apt-get -y install libxml2-dev libssl-dev libcurl4-openssl-dev libudunits2-dev gdal-bin libgdal-dev libproj-dev libv8-dev default-jdk libmagick++-dev

# requisites for Markdown
apt-get -y install texlive-full pandoc-citeproc
Expand Down Expand Up @@ -45,115 +45,115 @@ EOF

R --vanilla << EOF
# development
pacman::p_install(devtools)
pacman::p_install(packrat)
pacman::p_install(vcr)
pacman::p_install(crul)
pacman::p_install(testthat)
pacman::p_install(usethis)
pacman::p_install(devtools, force = FALSE)
pacman::p_install(packrat, force = FALSE)
pacman::p_install(vcr, force = FALSE)
pacman::p_install(crul, force = FALSE)
pacman::p_install(testthat, force = FALSE)
pacman::p_install(usethis, force = FALSE)
# general
pacman::p_install(data.table)
pacman::p_install(tidyverse)
pacman::p_install(lubridate)
pacman::p_install(janitor)
pacman::p_install(haven)
pacman::p_install(readxl)
pacman::p_install(openxlsx)
pacman::p_install(here)
pacman::p_install(fs)
pacman::p_install(data.table, force = FALSE)
pacman::p_install(tidyverse, force = FALSE)
pacman::p_install(lubridate, force = FALSE)
pacman::p_install(janitor, force = FALSE)
pacman::p_install(haven, force = FALSE)
pacman::p_install(readxl, force = FALSE)
pacman::p_install(openxlsx, force = FALSE)
pacman::p_install(here, force = FALSE)
pacman::p_install(fs, force = FALSE)
# documentation
pacman::p_install(roxygen2)
pacman::p_install(rmarkdown)
pacman::p_install(bookdown)
pacman::p_install(pkgdown)
pacman::p_install(xaringan)
pacman::p_install(Rdpack)
pacman::p_install(roxygen2, force = FALSE)
pacman::p_install(rmarkdown, force = FALSE)
pacman::p_install(bookdown, force = FALSE)
pacman::p_install(pkgdown, force = FALSE)
pacman::p_install(xaringan, force = FALSE)
pacman::p_install(Rdpack, force = FALSE)
# databases
pacman::p_install(DBI)
pacman::p_install(dbplyr)
pacman::p_install(RMariaDB)
pacman::p_install(RPostgreSQL)
pacman::p_install(glue)
pacman::p_install(chunked)
pacman::p_install(DBI, force = FALSE)
pacman::p_install(dbplyr, force = FALSE)
pacman::p_install(RMariaDB, force = FALSE)
pacman::p_install(RPostgreSQL, force = FALSE)
pacman::p_install(glue, force = FALSE)
pacman::p_install(chunked, force = FALSE)
# paralelization
pacman::p_install(doParallel)
pacman::p_install(doParallel, force = FALSE)
# statistics
pacman::p_install(lme4)
pacman::p_install(glm2)
pacman::p_install(lmtest)
pacman::p_install(MASS)
pacman::p_install(censReg)
pacman::p_install(multiwayvcov)
pacman::p_install(rstan)
pacman::p_install(broom)
pacman::p_install(modelr)
pacman::p_install(forecast)
pacman::p_install(prophet)
pacman::p_install(tsibble)
pacman::p_install(fable)
pacman::p_install(tidymodels)
pacman::p_install(h2o)
pacman::p_install(e1071)
pacman::p_install(rpart)
pacman::p_install(nnet)
pacman::p_install(randomForest)
pacman::p_install(caret)
pacman::p_install(kernlab)
pacman::p_install(glmnet)
pacman::p_install(ROCR)
pacman::p_install(pROC)
pacman::p_install(gbm)
pacman::p_install(party)
pacman::p_install(arules)
pacman::p_install(tree)
pacman::p_install(klaR)
pacman::p_install(RWeka)
pacman::p_install(lars)
pacman::p_install(earth)
pacman::p_install(CORElearn)
pacman::p_install(mboost)
pacman::p_install(mlr)
pacman::p_install(lme4, force = FALSE)
pacman::p_install(glm2, force = FALSE)
pacman::p_install(lmtest, force = FALSE)
pacman::p_install(MASS, force = FALSE)
pacman::p_install(censReg, force = FALSE)
pacman::p_install(multiwayvcov, force = FALSE)
pacman::p_install(rstan, force = FALSE)
pacman::p_install(broom, force = FALSE)
pacman::p_install(modelr, force = FALSE)
pacman::p_install(forecast, force = FALSE)
pacman::p_install(prophet, force = FALSE)
pacman::p_install(tsibble, force = FALSE)
pacman::p_install(fable, force = FALSE)
pacman::p_install(tidymodels, force = FALSE)
pacman::p_install(h2o, force = FALSE)
pacman::p_install(e1071, force = FALSE)
pacman::p_install(rpart, force = FALSE)
pacman::p_install(nnet, force = FALSE)
pacman::p_install(randomForest, force = FALSE)
pacman::p_install(caret, force = FALSE)
pacman::p_install(kernlab, force = FALSE)
pacman::p_install(glmnet, force = FALSE)
pacman::p_install(ROCR, force = FALSE)
pacman::p_install(pROC, force = FALSE)
pacman::p_install(gbm, force = FALSE)
pacman::p_install(party, force = FALSE)
pacman::p_install(arules, force = FALSE)
pacman::p_install(tree, force = FALSE)
pacman::p_install(klaR, force = FALSE)
pacman::p_install(RWeka, force = FALSE)
pacman::p_install(lars, force = FALSE)
pacman::p_install(earth, force = FALSE)
pacman::p_install(CORElearn, force = FALSE)
pacman::p_install(mboost, force = FALSE)
pacman::p_install(mlr, force = FALSE)
# maps
pacman::p_install(sf)
pacman::p_install(spData)
pacman::p_install(tmap)
pacman::p_install(cartography)
pacman::p_install(sf, force = FALSE)
pacman::p_install(spData, force = FALSE)
pacman::p_install(tmap, force = FALSE)
pacman::p_install(cartography, force = FALSE)
# visualization
pacman::p_install(corrplot)
pacman::p_install(lattice)
pacman::p_install(shiny)
pacman::p_install(shinydashboard)
pacman::p_install(golem)
pacman::p_install(shinyjs)
pacman::p_install(V8)
pacman::p_install(highcharter)
pacman::p_install(plotly)
pacman::p_install(ggvis)
pacman::p_install(DT)
pacman::p_install(shinyWidgets)
pacman::p_install(shinydashboardPlus)
pacman::p_install(bsplus)
pacman::p_install(plotly)
pacman::p_install(shinyML)
pacman::p_install(corrplot, force = FALSE)
pacman::p_install(lattice, force = FALSE)
pacman::p_install(shiny, force = FALSE)
pacman::p_install(shinydashboard, force = FALSE)
pacman::p_install(golem, force = FALSE)
pacman::p_install(shinyjs, force = FALSE)
pacman::p_install(V8, force = FALSE)
pacman::p_install(highcharter, force = FALSE)
pacman::p_install(plotly, force = FALSE)
pacman::p_install(ggvis, force = FALSE)
pacman::p_install(DT, force = FALSE)
pacman::p_install(shinyWidgets, force = FALSE)
pacman::p_install(shinydashboardPlus, force = FALSE)
pacman::p_install(bsplus, force = FALSE)
pacman::p_install(plotly, force = FALSE)
pacman::p_install(shinyML, force = FALSE)
# networks
pacman::p_install(igraph)
pacman::p_install(ggraph)
pacman::p_install(tidygraph)
pacman::p_install(visNetwork)
pacman::p_install(network)
pacman::p_install(networkDynamic)
pacman::p_install(ndtv)
pacman::p_install(intergraph)
pacman::p_install(igraphdata)
pacman::p_install(qgraph)
pacman::p_install(igraph, force = FALSE)
pacman::p_install(ggraph, force = FALSE)
pacman::p_install(tidygraph, force = FALSE)
pacman::p_install(visNetwork, force = FALSE)
pacman::p_install(network, force = FALSE)
pacman::p_install(networkDynamic, force = FALSE)
pacman::p_install(ndtv, force = FALSE)
pacman::p_install(intergraph, force = FALSE)
pacman::p_install(igraphdata, force = FALSE)
pacman::p_install(qgraph, force = FALSE)
q()
EOF
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