An open-source implementation of Google's PaLM models

JMED-LLM: Japanese Medical Evaluation Dataset for Large Language Models

⛷️ LLaMA-MoE: Building Mixture-of-Experts from LLaMA with Continual Pre-training (EMNLP 2024)

HeaRT: Health Record Timeliner (臨床医学テキスト時系列可視化システム)

Simple implementation of OpenAI CLIP model in PyTorch.

A tool for extracting plain text from Wikipedia dumps

A simple to use pytorch wrapper for contrastive self-supervised learning on any neural network

CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]

A Japanese Medical Information Extraction Toolkit

Build Agglomerative hierarchical clustering algorithm from scratch, i.e. WITHOUT any advance libraries such as Numpy, Pandas, Scikit-learn, etc.

BERTとSQuAD定式化によるWikipedia属性値抽出手法

A Silver Standard Corpus of Human Phenotype-Gene Relations

Code Repository for Machine Learning with PyTorch and Scikit-Learn

To speed up LLMs' inference and enhance LLM's perceive of key information, compress the prompt and KV-Cache, which achieves up to 20x compression with minimal performance loss.

a module to calculate the MeSH similarity

Variant to disease dataset workflows for Open Targets Genetics

Source code and dataset for ACL 2019 paper "ERNIE: Enhanced Language Representation with Informative Entities"

Graph Neural Network Library for PyTorch

Bipartite Configuration Model for Python

Representation learning on large graphs using stochastic graph convolutions.

A near real-time named-entity recognizer

Implementation of Graph Auto-Encoders in TensorFlow

Graph Auto-Encoder in PyTorch

Read-only release history for UMLS-Interface

The implementation of the algorithm proposed in A Principled Massive-Graph Similarity Function, and improvement of this algorith.

A Python frontend to (Open Biomedical) Ontologies.

Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets