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@rsinghlab

Singh Lab @ Brown

Repository for projects developed in the lab

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  1. MADDi MADDi Public

    This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).

    Jupyter Notebook 99 18

  2. pyaging pyaging Public

    A Python-based compendium of GPU-optimized aging clocks.

    Jupyter Notebook 93 3

  3. SCOT SCOT Public

    Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

    Jupyter Notebook 70 17

  4. AltumAge AltumAge Public

    Jupyter Notebook 30 9

  5. GNN-Tumor-Seg GNN-Tumor-Seg Public

    Using Graph Neural Networks to Segment MRIs of Brain Tumors

    Python 23 4

  6. scNODE scNODE Public

    scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

    Jupyter Notebook 19 2

Repositories

Showing 10 of 27 repositories
  • scContrast Public

    A contrastive learning based approach to learn universal cell representation

    rsinghlab/scContrast’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 20, 2025
  • pyaging Public

    A Python-based compendium of GPU-optimized aging clocks.

    rsinghlab/pyaging’s past year of commit activity
    Jupyter Notebook 93 BSD-3-Clause 3 0 0 Updated Apr 12, 2025
  • rsinghlab/ML_epigenetic_features_glioblastoma’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 11, 2025
  • STING Public

    Spatial Transcriptomics cluster Inference with Nested GNNs

    rsinghlab/STING’s past year of commit activity
    Python 0 0 0 0 Updated Mar 13, 2025
  • Shape-Blind Public
    rsinghlab/Shape-Blind’s past year of commit activity
    Jupyter Notebook 7 0 1 0 Updated Mar 4, 2025
  • K-Paths Public

    Official Implementation of K-Paths: Reasoning over Graph Paths for Drug Repurposing and Drug Interaction Prediction.

    rsinghlab/K-Paths’s past year of commit activity
    Python 11 0 0 0 Updated Feb 15, 2025
  • TimeFlies Public
    rsinghlab/TimeFlies’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Feb 6, 2025
  • HistoneClocks Public

    This repository contains the code and data to reproduce the results of our paper entitled "Histone mark age of human tissues and cells".

    rsinghlab/HistoneClocks’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Jan 3, 2025
  • scMultiNODE Public

    scMultiNODE: Temporal Single-Cell Data Integration across Unaligned Modalities

    rsinghlab/scMultiNODE’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 1, 2024
  • QZERO Public

    Retrieval Augmented Zero-Shot Text Classification

    rsinghlab/QZERO’s past year of commit activity
    Python 5 0 2 0 Updated Nov 1, 2024

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