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Computed Tomography to Finite Elements
SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
Practice your pandas skills!
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
(aka sc-atlasing-toolbox) Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
Accelerated, Python-only, single-cell integration benchmarking metrics
An open-source cross-platform alternative to AirDrop
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
Scripts/Notebooks for "Training models on atlas-scale single-cell datasets" at scverse Conference 2024
A python package that allows easy sbatch job script creation and submissions on hpc clusters, directly from python.
AsperaSRAgetter provides an easy way to download sequencing data from ENA by using Aspera.
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
Learning Rust By Practice, narrowing the gap between beginner and skilled-dev through challenging examples, exercises and projects.
scRNA multimodal analysis pipeline utilised for large dataset processing
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
The most no-nonsense, locally or API-hosted AI code completion plugin for Visual Studio Code - like GitHub Copilot but 100% free.
