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updated changelog
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puethe committed May 14, 2020
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# Change Log

[v2.14.4](https://github.com/sanger-pathogens/ariba/tree/v2.14.4) (2019-09-24)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.3...v2.14.4)
## [v2.14.5](https://github.com/sanger-pathogens/ariba/tree/v2.14.5) (2020-05-14)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.4...v2.14.5)

**Fixed bugs:**
**Closed issues:**

- Megares Downloading Error [\#294](https://github.com/sanger-pathogens/ariba/issues/294)
- Summarising MLST reports? [\#292](https://github.com/sanger-pathogens/ariba/issues/292)
- CARD 3.0.6 introduces white space in seq id causing fasta/metadata mismatch [\#284](https://github.com/sanger-pathogens/ariba/issues/284)
- ARGannot download fails [\#281](https://github.com/sanger-pathogens/ariba/issues/281)

[v2.14.3](https://github.com/sanger-pathogens/ariba/tree/v2.14.3) (2019-08-23)
**Merged pull requests:**

- bump version number [\#297](https://github.com/sanger-pathogens/ariba/pull/297) ([puethe](https://github.com/puethe))
- Handle megares 2.0.0 [\#295](https://github.com/sanger-pathogens/ariba/pull/295) ([martinghunt](https://github.com/martinghunt))
- Correct swapped col and row filters [\#288](https://github.com/sanger-pathogens/ariba/pull/288) ([aunderwo](https://github.com/aunderwo))
- Remove support information [\#286](https://github.com/sanger-pathogens/ariba/pull/286) ([kpepper](https://github.com/kpepper))

## [v2.14.4](https://github.com/sanger-pathogens/ariba/tree/v2.14.4) (2019-09-24)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.3...v2.14.4)

**Merged pull requests:**

- Fixed GitHub issue \#281 - ARG-ANNOT Fails to Download [\#282](https://github.com/sanger-pathogens/ariba/pull/282) ([kpepper](https://github.com/kpepper))

## [v2.14.3](https://github.com/sanger-pathogens/ariba/tree/v2.14.3) (2019-08-30)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.2...v2.14.3)

**Fixed bugs:**
**Closed issues:**

- Version 3.0.3 of CARD breaks prepareref [\#278](https://github.com/sanger-pathogens/ariba/issues/278)
- RT 667288: Change docker file Ariba git clone to a copy
- matplotlib listed twice as a dep in setup.py [\#275](https://github.com/sanger-pathogens/ariba/issues/275)
- v2.14.1 attributeError: 'Namespace' object has no attribute 'cdhit\_max\_memory' [\#273](https://github.com/sanger-pathogens/ariba/issues/273)
- Use ariba run for several isolates in batch [\#262](https://github.com/sanger-pathogens/ariba/issues/262)
- Stopping! Signal received: 13 [\#238](https://github.com/sanger-pathogens/ariba/issues/238)

**Merged pull requests:**

- Added default locale to docker file [\#280](https://github.com/sanger-pathogens/ariba/pull/280) ([kpepper](https://github.com/kpepper))
- Fix for issue \#278 Version 3.0.3 of CARD breaks prepareref [\#279](https://github.com/sanger-pathogens/ariba/pull/279) ([kpepper](https://github.com/kpepper))
- Remove extra matplotlib entry in install\_requires [\#277](https://github.com/sanger-pathogens/ariba/pull/277) ([andersgs](https://github.com/andersgs))
- Removed the specific Ariba release number from the docker file [\#276](https://github.com/sanger-pathogens/ariba/pull/276) ([kpepper](https://github.com/kpepper))

[v2.14.2](https://github.com/sanger-pathogens/ariba/tree/v2.14.2) (2019-06-18)
## [v2.14.2](https://github.com/sanger-pathogens/ariba/tree/v2.14.2) (2019-06-21)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.1...v2.14.2)

**Fixed bugs:**

- Added Spades assembler into Docker file - RT ticket 660940
- Incremented release number
- Added LICENSE file into release distribution - RT ticket 660890
- Issue with ariba and slurm \(signal 18, signal 20\) [\#263](https://github.com/sanger-pathogens/ariba/issues/263)

[v2.14.1](https://github.com/sanger-pathogens/ariba/tree/v2.14.1) (2019-06-13)
**Merged pull requests:**

- RT 660940 - add spades to docker file [\#274](https://github.com/sanger-pathogens/ariba/pull/274) ([kpepper](https://github.com/kpepper))
- Added AUTHORS and LICENSE to the manifest [\#272](https://github.com/sanger-pathogens/ariba/pull/272) ([kpepper](https://github.com/kpepper))

## [v2.14.1](https://github.com/sanger-pathogens/ariba/tree/v2.14.1) (2019-06-13)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.0...v2.14.1)

**Fixed bugs:**
**Merged pull requests:**

- Ariba fails to install from PyPI due to missing .h files in distribution. Related to MANIFEST.in change in [\#269](https://github.com/sanger-pathogens/ariba/pull/269)
- Fix for Issue [\#263](https://github.com/sanger-pathogens/ariba/issues/263)
- Backed out MANIFEST.in change. Bumped release number to v2.14.1. [\#271](https://github.com/sanger-pathogens/ariba/pull/271) ([kpepper](https://github.com/kpepper))

[v2.14.0](https://github.com/sanger-pathogens/ariba/tree/v2.14.0) (2019-06-06)
## [v2.14.0](https://github.com/sanger-pathogens/ariba/tree/v2.14.0) (2019-06-06)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.13.5...v2.14.0)

**Closed issues:**
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\* *This Change Log was automatically generated by [github_changelog_generator](https://github.com/skywinder/Github-Changelog-Generator)*
\* *This Change Log was automatically generated by [github_changelog_generator](https://github.com/skywinder/Github-Changelog-Generator)*

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