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36 Open 154 Closed
36 Open 154 Closed
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Issues list

seqkit split does not work expectively bug Something isn't working
#377 opened Mar 8, 2025 by yumisims
@yumisims
Ticket_id addition to file name enhancement New feature or request
#376 opened Mar 6, 2025 by DLBPointon
12
Convert local Juicer module into NF-Core module enhancement New feature or request Module Module effecting work
#373 opened Mar 4, 2025 by DLBPointon
Convert local module seqkit_split to NF-Core module enhancement New feature or request Module Module effecting work
#372 opened Mar 4, 2025 by DLBPointon
gene alignment script update
#371 opened Mar 3, 2025 by yumisims
@yumisims
cram_filter container remake
#370 opened Mar 3, 2025 by yumisims
@yumisims
Update GENERATE_CRAM_CSV to samtools 1.20 enhancement New feature or request Module Module effecting work
#369 opened Mar 3, 2025 by DLBPointon
Template Update to 3.0 enhancement New feature or request Pipeline Pipeline wide effecting work Planned Additions A planned addition to the initial project
#367 opened Feb 28, 2025 by DLBPointon Release 1
Setup documentation needs updating documentation Improvements or additions to documentation
#365 opened Feb 21, 2025 by DLBPointon
2
The local test dataset does not contain a file at the given location. bug Something isn't working
#364 opened Feb 21, 2025 by mahesh-panchal
1
2
NF-Validation to NF-Schema bug Something isn't working Pipeline Pipeline wide effecting work Planned Additions A planned addition to the initial project
#363 opened Feb 21, 2025 by DLBPointon
[KNOWN BUG] PretextGraph sometimes generates a malformed graph upon ingestion bug Something isn't working
#359 opened Jan 30, 2025 by DLBPointon Release 1
1
@DLBPointon
2
ERROR ~ No such variable: coverage_report bug Something isn't working
#343 opened Dec 6, 2024 by Surbhigrewal
2
3
Refactor / Re-write enhancement New feature or request
#324 opened Nov 15, 2024 by DLBPointon
@DLBPointon
1
Test data location enhancement New feature or request
#314 opened Aug 16, 2024 by muffato
1
Missing data bug Something isn't working
#313 opened Aug 16, 2024 by muffato
Ensure s3 paths work enhancement New feature or request
#310 opened Jul 18, 2024 by DLBPointon
[1.2.0] - PacBio Only enhancement New feature or request
#297 opened May 14, 2024 by DLBPointon
5
[1.1.2] Remove executables from bin and generate containers if required enhancement New feature or request
#296 opened May 13, 2024 by DLBPointon
3
[1.2.0 - Ancient Destiny] Chunk fasta reads for better parallelization for revio pacbio data
#285 opened Mar 20, 2024 by DLBPointon
4
[1.3.0 - Ancient Puddlejumper] - Yet Another Module Update! enhancement New feature or request
#284 opened Mar 15, 2024 by DLBPointon Release 1
1
@DLBPointon
1
Resources review - specify for each module ( adjust resources Updates to base.config to optimise resources for all data sizes.. enhancement New feature or request
#252 opened Feb 13, 2024 by weaglesBio
@yumisims @DLBPointon @weaglesBio
6
v2 - PNG display plugin for JBrowse enhancement New feature or request help wanted Extra attention is needed
#251 opened Feb 13, 2024 by DLBPointon
1
v2 - Mapped subsetting enhancement New feature or request
#243 opened Feb 8, 2024 by DLBPointon Release 2
@DLBPointon
1
csv generator should be changed to only accept absolute paths enhancement New feature or request
#227 opened Jan 31, 2024 by DLBPointon
@DLBPointon
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