sasi-arunachalam
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Python_panda_scripts Public
This module has list of small scripts that I wrote /used for my data processing or plots in nest generation sequencing data analysis
Jupyter Notebook UpdatedOct 3, 2024 -
Pyclone_input_generator Public
This program creates inputs for pyclone run from SNV ,copy number data
Jupyter Notebook UpdatedSep 28, 2021 -
drawCell Public
Forked from svalvaro/drawCellR package to create cell pictures.
R UpdatedAug 18, 2021 -
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DoAbsolute Public
Forked from ShixiangWang/DoAbsolute📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package
R Other UpdatedFeb 19, 2021 -
Pandas-Data-Science-Tasks Public
Forked from KeithGalli/Pandas-Data-Science-TasksSet of real world data science tasks completed using the Python Pandas library
Jupyter Notebook UpdatedJan 14, 2020 -
machine_learning_examples Public
Forked from nithyadurai87/machine_learning_examplesmachine_learning_examples
HTML UpdatedApr 25, 2019 -
RISE Public
Forked from damianavila/RISERISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension
JavaScript BSD 3-Clause "New" or "Revised" License UpdatedFeb 12, 2019 -
This program removes mouse contamination from BAM files
Python MIT License UpdatedFeb 7, 2019 -
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rnaseqGene Public
Forked from thelovelab/rnaseqGeneRNA-seq workflow: gene-level exploratory analysis and differential expression
UpdatedAug 21, 2018 -
oneliners Public
Forked from stephenturner/onelinersUseful bash one-liners for bioinformatics.
UpdatedAug 14, 2018 -
This program extracts mouse reads from SAM file.
Python UpdatedNov 27, 2017 -
This program extracts unaligned reads (*) from SAM files.
Python UpdatedNov 27, 2017 -
This program removes mouse reads /ambiguous reads from the aligned SAM files .
Python MIT License UpdatedNov 27, 2017 -
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HCI-Scripts Public
Forked from tjparnell/HCI-ScriptsMiscellaneous bioinformatics scripts written by me for myself and other people
Perl Artistic License 2.0 UpdatedNov 22, 2017 -
biotoolbox Public
Forked from tjparnell/biotoolboxTools for querying and analysis of genomic data
Perl Artistic License 2.0 UpdatedNov 22, 2017 -
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Toolkit for processing sequences in FASTA/Q formats
C MIT License UpdatedNov 7, 2017 -
statistical-learning Public
Forked from khanhnamle1994/statistical-learningLecture Slides and R Sessions for Trevor Hastie and Rob Tibshinari's "Statistical Learning" Stanford course
R UpdatedOct 19, 2017 -
miRNAseq_rnw Public
Forked from CSB-IG/miRNAseq_rnwmiRNAseq regulatory networks
R GNU General Public License v3.0 UpdatedMar 17, 2017