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Electronic control of microscope elements (camera/laser triggering, TTL, PWM, servos, analog i/o) based on affordable FPGAs, integrated with Micro-Manager, Java, Python and LabView.

Protocol for setting up an automated 3D and multi-colour single-molecule microscope

Drift estimation

LabVIEW code based on [M. T. J., van Loenhout, Biophys. J. 102, 2362–2371 (2012)] algorithm for tracking the position of microspheres under brightfield microscopy in real-time from an 8-bit camera.

A napari plugin to process and analyse images with chatGPT!

Single-molecule force spectroscopy calibration

Original reference implementation of "3D Gaussian Splatting for Real-Time Radiance Field Rendering"

Computing Triple-Correlation amongst three binary 2D sparse matrix

SMLM imaging processing. accelerate by pytorch GPU coding

run_SIMPLER is a graphical user interface that runs in Matlab (version 2015a or later with Curve Fitting Tool installed). This app allows users of SIMPLER to perform all necessary operations to dec…

Recipes for open microscopy

Code used in DAISY to correct astigmatism data using the SAF reference

For opening ImageJ TrackMate .xml files with python.

An EMU plugin to control a localization microscope in Micro-Manager and perform unsupervised imaging.

This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.

A collection of MATLAB tools for single-molecule image analysis.

napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS)

A 2D wave simulator running on the GPU. Can be used for 2D light and sound simulations.

MATLAB Code and Sample Data for a Basic 2-color KEHRMIT+CIDER Experiment

App for interactive simulation and visualization of point spread functions.

Play around with the vectorial description of a dipole emitter, using your own fluorescence microscope properties

Code associated with the microscopy technique ZIMFLUX

PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track