initial commit

Makefile

@@ -0,0 +1,18 @@
+#
+#  create web pages for lasermedia
+#
+
+SRC =
+
+all:
+	~/Documents/Code/git/lasermedia/makepages
+
+one:
+	~/Documents/Code/git/lasermedia/makepages -n '-1'
+
+install:
+	rsync -ave ssh lasermedia/ omlc.org:/var/www/html/spectra/lasermedia
+
+clean:
+	rm -rf lasermedia
+

abs-js.template

@@ -0,0 +1,85 @@
+var chart;
+$(document).ready(function() \{
+chart = new Highcharts.Chart(\{
+    chart: \{
+      renderTo: 'absPlot', 
+      zoomType: 'xy',
+      defaultSeriesType: 'line',
+      backgroundColor : null
+    \},
+    title: \{
+      text: "{$abs_unicode_name}"
+    \},
+	credits: \{
+		enabled: true,
+		href: "http://omlc.org/spectra/PhotochemCAD/html/{$abs_name}.html",
+		text: "omlc.org",
+		position: \{
+			align:'right',
+			x : -15,
+			verticalAlign: 'bottom',
+			y : -60,
+		\}
+	\},
+    xAxis: \{
+      title: \{
+        enabled: true,
+        text: 'Wavelength (nm)'
+      \},
+      startOnTick: true,
+      endOnTick: true,
+      showFirstLabel: false,
+      showLastLabel: false,
+      maxPadding: 0.05,
+      gridLineWidth: 1,
+    \},
+    yAxis: \{
+      title: \{
+        enabled: true,
+        text: 'Absorption for unity concentration (m\u207B\u00B9)'
+      \},
+      startOnTick: true,
+      endOnTick: true,
+      showFirstLabel: false,
+      showLastLabel: false,
+      maxPadding: 0.05,
+      gridLineWidth: 1,
+      labels: \{ formatter: function() \{return this.value;\} \}
+    \},
+    tooltip: \{
+      formatter: function() \{
+        return this.x.toFixed(2) + 'nm, ' + this.y +'m\u207B\u00B9';
+      \}
+    \},
+    legend: \{
+      enabled:false
+    \},
+	plotOptions: \{
+		line: \{
+			lineWidth: 1,
+			marker: \{
+				enabled: false,
+				states: \{
+					hover: \{
+						enabled: true,
+						radius: 5
+					\}
+				\}
+			\},
+			shadow: false,
+			states: \{
+				hover: \{
+					lineWidth: 1
+				\}
+			\}
+		\},
+     \},
+  series: [
+\{
+	color: 'rgba(223, 83, 83, 1.0)',
+	pointInterval: {$x_abs_interval},
+	pointStart: {$x_abs_start},
+	data: {$abs_js_data},
+\}]
+\});
+\});

abs.template

@@ -0,0 +1,17 @@
+# Optical absorption spectrum of {sample_$atom}:{$sample_host} ({$name_chem_txt})
+# assuming unity concentration per meter.  This data was part of the NASA 
+# Laser Spectra Database found on the web until December of 2005 which
+# was created by Pat Cross working at NASA Langley Research Center, Internal
+# Operations Group, Aerospace Electronics Systems Division, Remote Sensing.
+#
+# The spectra was collected by {$initials} on {$exp_date} and was 
+# annotated on {$rec_date}.  The sample name was "{$sample}" was a {$thickness}
+# long piece of {$atom}:{$host}.  {$sample_polaralization} 
+# {$lambda_pol}
+#
+# Spectra were recorded from {$lambda_min} to {$lambda_max}nm
+# every {$lambda_delta}nm at room temperature.
+#
+# {$note}
+#
+##Wavelength (nm)	Absorbance (/meter) 

ems-js.template

@@ -0,0 +1,85 @@
+var chart;
+$(document).ready(function() \{
+chart = new Highcharts.Chart(\{
+    chart: \{
+      renderTo: 'emsPlot', 
+      zoomType: 'xy',
+      defaultSeriesType: 'line',
+      backgroundColor : null
+    \},
+	credits: \{
+		enabled: true,
+		href: "http://omlc.org/spectra/PhotochemCAD/html/{$ems_name}.html",
+		text: "omlc.org",
+		position: \{
+			align:'right',
+			x : -15,
+			verticalAlign: 'bottom',
+			y : -60,
+		\}
+	\},
+    title: \{
+      text: "{$ems_unicode_name}"
+    \},
+    xAxis: \{
+      title: \{
+        enabled: true,
+        text: 'Wavelength (nm)'
+      \},
+      startOnTick: true,
+      endOnTick: true,
+      showFirstLabel: false,
+      showLastLabel: false,
+      maxPadding: 0.05,
+      gridLineWidth: 1,
+    \},
+    yAxis: \{
+      title: \{
+        enabled: true,
+        text: 'Normalized Emission'
+      \},
+      startOnTick: true,
+      endOnTick: true,
+      showFirstLabel: false,
+      showLastLabel: false,
+      maxPadding: 0.05,
+      gridLineWidth: 1,
+      labels: \{ formatter: function() \{return this.value;\} \}
+    \},
+    tooltip: \{
+      formatter: function() \{
+        return this.x.toFixed(2) + 'nm, ' + this.y.toFixed(4);
+      \}
+    \},
+    legend: \{
+      enabled:false
+    \},
+	plotOptions: \{
+		line: \{
+			lineWidth: 1,
+			marker: \{
+				enabled: false,
+				states: \{
+					hover: \{
+						enabled: true,
+						radius: 5
+					\}
+				\}
+			\},
+			shadow: false,
+			states: \{
+				hover: \{
+					lineWidth: 1
+				\}
+			\}
+		\},
+     \},
+  series: [
+\{
+  color: 'rgba(223, 83, 83, 1.0)',
+	pointInterval: {$x_ems_interval},
+	pointStart: {$x_ems_start},
+    data: {$ems_js_data}
+\}]
+\});
+\});

ems.template

@@ -0,0 +1,18 @@
+# Optical emission spectrum of {$sample_atom}:{$sample_host} ({$name_chem_txt})
+# assuming unity concentration per meter.  This data was part of the NASA 
+# Laser Spectra Database found on the web until December of 2005 which
+# was created by Pat Cross working at NASA Langley Research Center, Internal
+# Operations Group, Aerospace Electronics Systems Division, Remote Sensing.
+#
+# The spectra was collected by {$initials} on {$exp_date} and was 
+# annotated on {$rec_date}.  The sample name was "{$sample}" was a {$thickness}
+# long piece of {$atom}:{$host}. {$sample_polaralization} 
+# {$lambda_pol}
+#
+# Spectra were recorded from {$lambda_min}nm to {$lambda_max}nm
+# every {$lambda_delta}nm at room temperature.  The
+# excitation wavelength was {$lambda_exc ? $lambda_exc . 'nm' : 'unknown'}.
+#
+# {$note}
+#
+##Wavelength (nm)	Absorbance (/meter) 

html-abs.template

@@ -0,0 +1,19 @@
+		<h3>Absorption</h3>
+
+		<div id="absPlot" style="width: 540px; height: 400px; margin: 0 auto"></div>
+
+		<p>	
+		The spectra was collected by {$initials} on {$exp_date}.
+		The sample was {$thickness} mm thick.
+		{$sample_polarization} 
+		</p>
+
+		<p>		
+		Spectra were recorded from {$lambda_min} to {$lambda_max}nm
+		every {$lambda_delta}nm at room temperature.
+		{$lambda_pol}
+        </p>
+
+		<p style="text-align:center">
+		<A HREF="../data/{$name_id}-orig-abs.txt">Original Data</A> |
+		<A HREF="../data/{$name_id}-abs.txt">Extinction Data</A> 

html-bot.template

@@ -0,0 +1,26 @@
+
+        </div>
+        </div><!-- end row -->
+       </div><!-- end wrapper -->
+    </section><!-- end hero area -->
+
+
+<!-- footer area -->    
+<footer>
+	<div id="colophon" class="wrapper clearfix">
+    	<p> &copy; {$date} <a href="http://omlc.org/~prahl/">Scott Prahl</a></p>
+    </div>    
+</footer><!-- #end footer area --> 
+
+
+<!-- jQuery -->
+<script src="http://ajax.googleapis.com/ajax/libs/jquery/1/jquery.min.js"></script>
+<script>window.jQuery || document.write('<script src="js/libs/jquery-1.9.0.min.js">\x3C/script>')</script>
+
+<script defer src="http://omlc.org/js/flexslider/jquery.flexslider-min.js"></script>
+
+<!-- fire ups - read this file!  -->   
+<script src="http://omlc.org/js/main.js"></script>
+
+</body>
+</html>

html-ems.template

@@ -0,0 +1,22 @@
+    <h3>Fluorescence</h3>
+
+    <div id="emsPlot" style="width: 540px; height: 400px; margin: 0 auto"></div>
+
+	<p> 
+	This emission spectra of {$name_chem_html} was collected by {$initials} on {$exp_date}.  
+	The sample was {$thickness}mm thick. 
+	{$sample_polarization} 
+	</p>
+
+	<p> 
+	Spectra were recorded from {$lambda_min} to {$lambda_max}nm
+	every {$lambda_delta}nm at room temperature.  The excitation 
+	wavelength was {$lambda_exc ? $lambda_exc . 'nm' : 'unknown'}.
+    {$sensitizer_phrase}
+	</p>
+
+	<p style="text-align:center">
+	<A HREF="../data/{$name_id}-orig-ems.txt">Original Data</A> |
+	<A HREF="../data/{$name_id}-ems.txt">Emission Data</A> 
+	</p>
+

html-mid.template

@@ -0,0 +1,16 @@
+    <h3>Fluorescence</h3>
+
+    <div id="emsPlot" style="width: 540px; height: 400px; margin: 0 auto"></div>
+
+	<p> The fluorescence emission spectrum of {$abs_htmlName}
+	dissolved in {$ems_Solvent}.  {$exc_sentence} 
+	The quantum yield of this molecule is {$ems_QuantumYield} {$ems_short_reference}.
+	This spectrum was collected by {$ems_full_author} {$ems_fDate} 
+    using a {$ems_Instrument}. 
+    {$ems_full_instrument}</p>
+
+	<p style="text-align:center">
+	<A HREF="../data/{$id}-orig-ems.txt">Original Data</A> |
+	<A HREF="../data/{$id}-ems.txt">Emission Data</A> 
+	</p>
+