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Pull requests: scverse/scanpy

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70 Open 1,563 Closed
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Pull requests list

allowing dotplot to use two variables in groupby as x and y axis Area - Plotting 🌺
#2055 opened Nov 20, 2021 by zhangguy Loading…
@ivirshup
3
bug fix: hue in sc.pl.violin
#1822 opened Apr 29, 2021 by AnnaChristina Loading…
5
Add Shannon Component Analysis
#1780 opened Apr 6, 2021 by bendemeo Loading…
5
highly deviant genes implementation Needs info❔ More information needed
#1765 opened Mar 26, 2021 by ktpolanski Loading…
2
Making var_group_rotation work when swap_axes is True Area - Plotting 🌺
#1763 opened Mar 25, 2021 by gokceneraslan Loading…
1
Cell selection based on simultaneous expression (co-expression)
#1657 opened Feb 17, 2021 by GMaciag Loading…
Switch t-SNE implementation to openTSNE
#1561 opened Jan 2, 2021 by pavlin-policar • Draft
1 of 3 tasks
45
Skip louvain-dependent tests
#1524 opened Dec 2, 2020 by flying-sheep Loading…
2
Adjust Combat for control cells
#1501 opened Nov 19, 2020 by mbuttner Loading…
3
added support for individual cmaps for continous variables PR blocked: Waiting on author
#1489 opened Nov 10, 2020 by bfurtwa Loading…
7
Implement sc.get.summarized_expression_df
#1390 opened Aug 25, 2020 by gokceneraslan Loading…
9
More flexible umap
#1132 opened Mar 27, 2020 by ivirshup Loading…
4
Find gene symbols exist only in .raw attribute
#962 opened Dec 26, 2019 by mw201608 Loading…
2
Add layer support to sc.tl.score_genes
#959 opened Dec 25, 2019 by gokceneraslan Loading…
3
Add key_added option to sc.tl.paga
#957 opened Dec 19, 2019 by gokceneraslan Loading…
7
Fixup #566 & #706
#952 opened Dec 12, 2019 by QuarkFang Loading…
4
[WIP] ICA
#941 opened Nov 30, 2019 by ivirshup Loading…
5 tasks
1
7
Fix paga root
#910 opened Nov 8, 2019 by flying-sheep Loading…
1
2
support for weighted sampled data to rank genes and plot (dot, violin…
#644 opened May 14, 2019 by Khalid-Usman Loading…
39
Take n_bins into account for the cell_ranger flavor of highly_variable_genes
#624 opened Apr 26, 2019 by e-sollier Loading…
1
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