8 Pull requests merged by 3 people

• Backport PR #3477 on branch 1.11.x ((fix): remove @wraps(BaseException.add_note))

  #3478 merged Feb 21, 2025

• (fix): remove @wraps(BaseException.add_note)

  #3477 merged Feb 21, 2025

• Backport PR #3473 on branch 1.11.x ([pre-commit.ci] pre-commit autoupdate)

  #3474 merged Feb 19, 2025

• [pre-commit.ci] pre-commit autoupdate

  #3473 merged Feb 19, 2025

• Backport PR #3462 on branch 1.11.x ((chore): Simplify BasePlot’s var_groups)

  #3471 merged Feb 18, 2025

• Backport PR #3463 on branch 1.11.x ((fix): import skimage early in scublets without threshold)

  #3470 merged Feb 18, 2025

• (chore): Simplify BasePlot’s var_groups

  #3462 merged Feb 18, 2025

• (fix): import skimage early in scublets without threshold

  #3463 merged Feb 18, 2025

4 Issues closed by 2 people

• 3.11 Tests Don't Run

  #3475 closed Feb 21, 2025

• Integration Testing CI Install Failure on python 3.10

  #3472 closed Feb 21, 2025

• Make _to_dense public?

  #3386 closed Feb 20, 2025

• Dependency issue: sc.pp.scrublet require skimage implicitly

  #3459 closed Feb 18, 2025

5 Issues opened by 5 people

• GLIBCXX_3.4.30 not being imported from miniconda enviroment

  #3479 opened Feb 22, 2025

• [Question]: Usage of Graph Algorithms and Any Slowdowns?

  #3476 opened Feb 20, 2025

• 'ingest' on scvi-batch corrected reference?

  #3469 opened Feb 17, 2025

• Scanpy doesn't identify markers in marker genes dict but does as a string

  #3468 opened Feb 17, 2025

• converting strings to categoricals

  #3467 opened Feb 17, 2025

11 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• DensMAP support

  #2946 commented on Feb 21, 2025 • 3 new comments

• Speed up categorical regressor with numba

  #3353 commented on Feb 18, 2025 • 1 new comment

• A memory efficient implementation of the .mtx reading function

  #3389 commented on Feb 22, 2025 • 1 new comment

• densmap

  #1619 commented on Feb 18, 2025 • 0 new comments

• Add support for backed mode in calculate_qc_metrics

  #3464 commented on Feb 18, 2025 • 0 new comments

• fast array utils spinoff package

  #3449 commented on Feb 21, 2025 • 0 new comments

• Investigate Array API usage in scanpy codebase

  #3136 commented on Feb 22, 2025 • 0 new comments

• Added intercept to regress_out()

  #2731 commented on Feb 18, 2025 • 0 new comments

• Simplify scale

  #3351 commented on Feb 20, 2025 • 0 new comments

• (perf): remove out of core median in normalize_total

  #3379 commented on Feb 18, 2025 • 0 new comments

• fix int for shortcut

  #3461 commented on Feb 17, 2025 • 0 new comments