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Issues list

Posterior sampling with Messenger Pyro guides -> huge memory use. bug P1 pyro
#1801 opened Nov 21, 2022 by vitkl
1
5
User guide: gimVI P1 user guide
#1177 opened Sep 27, 2021 by adamgayoso
Within cluster DE test differential expression enhancement good first issue P2
#1456 opened Mar 22, 2022 by zoesteier scvi-tools 2.0
@PierreBoyeau
2
Labels Key in totalVI enhancement P2 totalvi
#1549 opened Jun 1, 2022 by StefanMDPhD
@canergen
4
Granular device management for Jax enhancement good first issue jax P1
#1553 opened Jun 2, 2022 by justjhong scvi-tools 1.3
@ori-kron-wis
1
Support to build NumPyro models. backlog enhancement jax
#1577 opened Jun 23, 2022 by justjhong
@justjhong
Implementation of PeakVI in Jax jax new model Proposals to implement new model P2
#1578 opened Jun 23, 2022 by justjhong
@RK900 @PierreBoyeau
Model creation fixtures backlog bug
#1586 opened Jun 28, 2022 by RK900
@RK900
Jax analog for FCLayers enhancement good first issue jax P1
#1620 opened Jul 30, 2022 by RK900 scvi-tools 1.3
2
@martinkim0
scvi-tools Jax support enhancement jax meta Refers to many issues new model Proposals to implement new model P1
#1718 opened Oct 6, 2022 by martinkim0
1 of 4 tasks
@martinkim0
3
Manager summary stats should be per field AnnDataManager backlog
#1744 opened Oct 16, 2022 by adamgayoso
3
Loss formulation in SCANVI bug P2 scanvi
#1784 opened Nov 10, 2022 by haoyang-insitro scvi-tools 2.0
5
Faster NB LL computation if data is known to be sparse enhancement P2
#1038 opened Apr 26, 2021 by adamgayoso
1
Some suggestion about GNN data enhancement P2
#1789 opened Nov 16, 2022 by HuangDDU scvi-tools 2.0
2
Spatial deconv models from rna model should also work with paths P1 spatial
#1826 opened Dec 21, 2022 by adamgayoso
@canergen
Finalize scBasset backlog enhancement help wanted
#1840 opened Jan 9, 2023 by adamgayoso
2 of 3 tasks
4
Model request: non-negative spatial factorization (NSF) backlog enhancement new model Proposals to implement new model
#1859 opened Jan 18, 2023 by aribenjamin
@aribenjamin
4
use_observed_lib_size=False fails with NaN for some datasets bug nan P0
#1903 opened Feb 11, 2023 by vitkl scvi-tools 1.2
@martinkim0
6
library_size argument not used fully in TOTALVI get_normalized_expression P1 totalvi
#1906 opened Feb 15, 2023 by deto
@adamgayoso
MultiVI changes enhancement multivi
#1935 opened Mar 1, 2023 by martinkim0
1 of 5 tasks
@martinkim0
Deprecate multivi setup anndata P2
#2073 opened May 31, 2023 by adamgayoso
@martinkim0
1
Add support for SpatialData enhancement P2 spatial
#2109 opened Jun 23, 2023 by martinkim0 scvi-tools 2.0
Multi-GPU support tracker enhancement P0
#2175 opened Jul 10, 2023 by martinkim0
1 of 4 tasks
scvi-tools 1.3
ValueError with NaN tensors in gimVI training bug P0
#2215 opened Jul 28, 2023 by sunericd scvi-tools 1.2
@martinkim0
12
Support training from AnnCollection enhancement
#3018 opened Oct 17, 2024 by jacobkimmel
1
ProTip! What’s not been updated in a month: updated:<2024-09-16.