Python package to study microbial communities using metabolic modeling.

Notebooks, code and intermediate data for the Arivale gene-environment interactions.

Materials and presentation for the 2022 ISB Microbiome course.

Analysis code and scripts for the Aquaponics collab with Jessica Day et. al.

Data and materials for the CCMB workshop on Cloud Computing and Microbiome Bioinformatics.

R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

Bacterial Compressed Sequencing

Code repository of the Earth Microbiome Project.