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3 stars written in Nextflow
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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 884 700 Updated Oct 16, 2024

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Nextflow 397 404 Updated Oct 15, 2024

A small-RNA sequencing analysis pipeline

Nextflow 73 125 Updated Oct 15, 2024