A small-RNA sequencing analysis pipeline

A DSL for data-driven computational pipelines

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Intersect multiple VCF files with haplotype awareness

Haplotype VCF comparison tools

genetic variant expressions, annotation, and filtering for great good.

This package takes FASTQ files from microfluidic PCR paired with next-generation sequencing and produces a filtered VCF file

a python bioinformatics framework