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Thoroughly Caffeinated
Thoroughly Caffeinated

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@GordonLab @ClinDesk @TheMITTech @BradnerLab @mit @Chaudhuri-Lab @mcwdsi

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Showing results

🔧 .files, including ~/.macos — sensible hacker defaults for macOS

Shell 9 4 Updated Mar 30, 2025

Simple Qt/Python based viewer for HDF5 files

Python 47 12 Updated Mar 26, 2025
HTML 2 3 Updated Aug 23, 2024

Arc Virtual Cell Atlas

Jupyter Notebook 259 23 Updated Mar 25, 2025

An rtl-sdr receiver for Itron ERT compatible smart meters operating in the 900MHz ISM band.

Go 2,311 257 Updated Feb 28, 2025

Unofficial Python system monitor and library for small IPS USB-C displays like Turing Smart Screen or XuanFang

Rich Text Format 1,438 235 Updated Apr 21, 2025

Python stuff for working with uMyo via USB base station

Python 9 5 Updated Nov 18, 2024

Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

Python 7 1 Updated Apr 21, 2025

genes and genomes at your fingertips

Python 388 38 Updated Feb 21, 2025
Jupyter Notebook 42 6 Updated Oct 30, 2024

🙌 OpenHands: Code Less, Make More

Python 53,387 5,955 Updated Apr 24, 2025

LIANA+: an all-in-one framework for cell-cell communication

Python 204 25 Updated Feb 13, 2025

Developer environments you can take with you

Rust 3,151 84 Updated Apr 24, 2025

Direct estimation of mean and covariance from single cell RNA seq experiments

Jupyter Notebook 104 10 Updated Feb 3, 2025

Python package to perform enrichment analysis from omics data.

Python 192 28 Updated Apr 20, 2025

A cross-platform java application for decoding, monitoring, recording and streaming trunked mobile and related radio protocols using Software Defined Radios (SDR). Website:

Java 1,745 280 Updated Apr 20, 2025

Survival analysis in Python

Python 2,436 560 Updated Oct 29, 2024

uBO Lite home (MV3)

JavaScript 1,693 64 Updated Apr 21, 2025

Convert methylation data to sparse objects for machine learning.

Python 1 Updated Apr 1, 2025

ConoDL is a sequence-based deep learning framework designed for the rapid and large-scale generation and screening of artificial conotoxins, including the conotoxin generation model, ConoGen, and t…

Python 2 Updated Mar 5, 2024

The Swiss Army knife for 802.11, BLE, HID, CAN-bus, IPv4 and IPv6 networks reconnaissance and MITM attacks.

Go 17,533 1,526 Updated Apr 16, 2025

Connect IDEMIA biometric readers to Home Assistant.

Go 5 Updated Sep 15, 2024

SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

Jupyter Notebook 158 29 Updated Mar 27, 2025

Open source implementation of AlphaFold3

Python 974 83 Updated Oct 7, 2024
Jupyter Notebook 59 8 Updated Jun 17, 2021

Solve puzzles. Improve your pytorch.

Jupyter Notebook 3,537 321 Updated Jul 15, 2024

🍊 📊 💡 Orange: Interactive data analysis

Python 5,133 1,051 Updated Apr 4, 2025

A modern model graph visualizer and debugger

JavaScript 1,170 99 Updated Apr 23, 2025

Pathformer: biological pathway informed transformer model

Python 28 7 Updated Dec 27, 2023
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