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fix: revert nf-core pipelines lint to nf-core lint
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Original file line number | Diff line number | Diff line change |
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@@ -86,12 +86,12 @@ jobs: | |
python -m pip install --upgrade pip | ||
pip install git+https://github.com/nf-core/[email protected] | ||
- name: Run nf-core pipelines lint | ||
- name: Run nf-core lint | ||
env: | ||
GITHUB_COMMENTS_URL: ${{ github.event.pull_request.comments_url }} | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
GITHUB_PR_COMMIT: ${{ github.event.pull_request.head.sha }} | ||
run: nf-core -l lint_log.txt pipelines lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md | ||
run: nf-core -l lint_log.txt lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md | ||
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||
- name: Save PR number | ||
if: ${{ always() }} | ||
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