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fix: revert nf-core pipelines lint to nf-core lint
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drpatelh committed Oct 23, 2024
1 parent 5ff529e commit 371be90
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions .github/workflows/linting.yml
Original file line number Diff line number Diff line change
Expand Up @@ -86,12 +86,12 @@ jobs:
python -m pip install --upgrade pip
pip install git+https://github.com/nf-core/[email protected]
- name: Run nf-core pipelines lint
- name: Run nf-core lint
env:
GITHUB_COMMENTS_URL: ${{ github.event.pull_request.comments_url }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
GITHUB_PR_COMMIT: ${{ github.event.pull_request.head.sha }}
run: nf-core -l lint_log.txt pipelines lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md
run: nf-core -l lint_log.txt lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md

- name: Save PR number
if: ${{ always() }}
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