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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 1k 183

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 82 36

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 66 29

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 59 17

  5. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 46 15

  6. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 46 12

Repositories

Showing 10 of 135 repositories
  • sparql-editor Public

    💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

    sib-swiss/sparql-editor’s past year of commit activity
    TypeScript 13 MIT 2 13 (1 issue needs help) 0 Updated Apr 18, 2025
  • ds-package-creator Public

    Split a R package into a "client" and "server" version , datashield ready.

    sib-swiss/ds-package-creator’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Apr 17, 2025
  • EPD Public

    The Eukaryotic Promoter Database (EPD) website

    sib-swiss/EPD’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Apr 16, 2025
  • snp_detect Public archive

    Scans a multiple alignment composed of genomic, mRNA, and EST sequences that are believed to originate from the same gene for the presence of sequence variations

    sib-swiss/snp_detect’s past year of commit activity
    Fortran 0 GPL-3.0 0 0 0 Updated Apr 16, 2025
  • prosite_scan Public archive

    PERL scripts for PROSITE searching and related stuff

    sib-swiss/prosite_scan’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Apr 16, 2025
  • PrfLib Public archive

    Collection of experimental programs supporting the new profile format and search method of PROSITE and NUCSITE

    sib-swiss/PrfLib’s past year of commit activity
    C 0 GPL-3.0 0 0 0 Updated Apr 16, 2025
  • BTLib Public archive

    Biology Toolkit Library Perl module: This Perl module provides objects useful for parsing and extracting information from DNA, protein, and other type of textual data found in biology sequence analysis and bioinformatics. It also provides scripts to index and retrieve records from databases in flat files.

    sib-swiss/BTLib’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated Apr 16, 2025
  • NGS-introduction-training Public Forked from sib-swiss/sequencing-data-analysis-training

    SIB course that introduces analysis of NGS data

    sib-swiss/NGS-introduction-training’s past year of commit activity
    Shell 0 CC-BY-4.0 13 0 0 Updated Apr 15, 2025
  • intro-bayesian-statistics-training Public

    SIB course on bayesian statistics with applications using Rstan

    sib-swiss/intro-bayesian-statistics-training’s past year of commit activity
    HTML 32 CC-BY-4.0 10 0 0 Updated Apr 15, 2025
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples’s past year of commit activity
    HTML 14 19 6 (1 issue needs help) 3 Updated Apr 15, 2025