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1. CalliNGS-NF_compression CalliNGS-NF_compression Public

   Forked from CRG-CNAG/CalliNGS-NF

   GATK RNA-Seq Variant Calling in Nextflow, with removed compression for fasta, fastq and vcf

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2. sarek_compression sarek_compression Public

   Forked from nf-core/sarek

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

   HTML

3. eager_compression eager_compression Public

   Forked from nf-core/eager

   A fully reproducible and state-of-the-art ancient DNA analysis pipeline

   Nextflow

4. rnaseq_compression rnaseq_compression Public

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow

5. taxprofiler_compression taxprofiler_compression Public

   Forked from nf-core/taxprofiler

   Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

   Nextflow

6. mag_compression mag_compression Public

   Forked from nf-core/mag

   Assembly and binning of metagenomes

   Nextflow